Here is a list of all files with brief descriptions:

addbox.cpp
AMRDamage.cpp
AMRDamage.H
AmrIce.cpp
AmrIce.H
AmrIceBase.H
AmrIceIO.cpp
AmrIceMesh.cpp
AmrIceThermodynamics.cpp
AMRMelange.cpp
AMRMelange.H
amrtocf.cpp
amrtoplot.cpp
amrtotxt.cpp
AVCAMRPoissonOp.cpp
AVCAMRPoissonOp.H
Averaging.cpp
Averaging.H
BasalFriction.cpp
BasalFriction.H
BasalFrictionRelation.cpp
BasalFrictionRelation.H
BasicThicknessIBC.cpp
BasicThicknessIBC.H
BISICLES_VERSION.H
CalvingModel.cpp
CalvingModel.H
cdriverconstants.h	Constants for bisicles_set_2d_data and bisicles_get_2d_data
CGOptimize.H
CGSolver.H
ColumnThermodynamics.f90
ComplexSurfaceFlux.cpp
ComplexSurfaceFlux.H
ConstitutiveRelation.cpp
ConstitutiveRelation.H
CopyBasalFriction.cpp
CopyBasalFriction.H
CrevasseCalvingModel.cpp
CrevasseCalvingModel.H
cwrapper.cpp
cwrapper.H	Provides functions inside a extern "C" block that can be called by C (or FORTRAN) program to control BISICLES, pass data to it, and retrieve data from it
DamageConstitutiveRelation.cpp
DamageConstitutiveRelation.H
defineLevelSigmaCS.cpp
defineLevelSigmaCS.H
diagnostics.cpp
discharge.cpp
DomainDiagnosticData.cpp
DomainDiagnosticData.H
driver.cpp
extract.cpp
ExtrapGhostCells.cpp
ExtrapGhostCells.H
fabncio.cpp
fabncio.H
faces.cpp
FASIceSolver.H
FASIceSolverI.H
FieldNames.cpp
FieldNames.H
FillFromReference.cpp
FillFromReference.H
flatten.cpp
FortranInterfaceBasalFriction.cpp
FortranInterfaceBasalFriction.H
FortranInterfaceIBC.cpp
FortranInterfaceIBC.H
FourthOrderAverage.cpp
FourthOrderAverage.H
GaussianBumpFriction.cpp
GaussianBumpFriction.H
gia-stats.cpp
glfaces.cpp
glfacesNew.cpp
GroundingLineLocalizedFlux.cpp
GroundingLineLocalizedFlux.H
HotspotFlux.cpp
HotspotFlux.H
HumpIBC.cpp
HumpIBC.H
IceConstants.H
IceInternalEnergyIBC.cpp
IceInternalEnergyIBC.H
IceThermodynamics.cpp
IceThermodynamics.H
IceThicknessIBC.H
IceUtility.cpp
IceUtility.H
IceVelocitySolver.H
IntFineInterp.cpp
IntFineInterp.H
InverseVerticallyIntegratedVelocitySolver.cpp
InverseVerticallyIntegratedVelocitySolver.H
ISMIP6OceanForcing.cpp
ISMIP6OceanForcing.H
JFNKSolver.cpp
JFNKSolver.H
KnownVelocitySolver.cpp
KnownVelocitySolver.H
L1L2ConstitutiveRelation.cpp
L1L2ConstitutiveRelation.H
LevelDataBasalFriction.cpp
LevelDataBasalFriction.H
LevelDataIBC.cpp
LevelDataIBC.H
LevelDataSurfaceFlux.cpp
LevelDataSurfaceFlux.H
LevelDataTemperatureIBC.cpp
LevelDataTemperatureIBC.H
LevelMappedDerivatives.cpp
LevelMappedDerivatives.H
LevelSigmaCS.cpp
LevelSigmaCS.H
MarineIBC.cpp
MarineIBC.H
MaskedCalvingModel.cpp
MaskedCalvingModel.H
merge.cpp
MuCoefficient.cpp
MuCoefficient.H
MultiLevelDataIBC.cpp
MultiLevelDataIBC.H
MultilevelIceVelOp.cpp
MultilevelIceVelOp.H
nctoamr.cpp
NonlinearViscousTensor.cpp
NonlinearViscousTensor.H
PetscAMRSolver.cpp
PetscAMRSolver.H
PetscIceSolver.cpp
PetscIceSolver.H
PiecewiseLinearFlux.cpp
PiecewiseLinearFlux.H
ppismip6.cpp
pythonf.cpp
PythonInterface.cpp
PythonInterface.H
ReadLevelData.cpp
ReadLevelData.H
RealFunction.H
ReflectGhostCells.cpp
ReflectGhostCells.H
Regression.H
rescale.cpp
singularStreamFriction.cpp
singularStreamFriction.H
stats.cpp
subregion.cpp
sum.cpp
SurfaceFlux.cpp
SurfaceFlux.H
testlibamrfile.cpp
testwrapper.F90
Transformation.H
twistyStreamFriction.cpp
twistyStreamFriction.H
UnstructuredIO.cpp
UnstructuredIO.H
VelocityBC.H
VerticalConductionInternalEnergyIBC.cpp
VerticalConductionInternalEnergyIBC.H
VieliPayneIBC.cpp
VieliPayneIBC.H