AMRLevel Class Reference

#include <AMRLevel.H>

Inheritance diagram for AMRLevel:

Inheritance graph
[legend]

List of all members.


Detailed Description

Abstract base class for time-dependent data at a level of refinement.

This is an abstract base class for data at the same level of refinement within a hierarchy of levels. The concrete class derived from AMRLevel is called a physics class. The domain of a level is a disjoint union of rectangles in a logically rectangular index space. Data is defined within this domain. There is also a problem domain, which may be larger, within which data can, in theory, be interpolated from some coarser level.

AMRLevel is intimately entangled with the AMR class. The AMR contains a collection of AMRLevel objects which represent a hierarchy of levels of refinement. The class AMR is responsible for calling the correct member functions of AMRLevel. The user is responsible for implementing the physics class, and might never call any AMRLevel functions described here.

Public Member Functions

 AMRLevel ()
virtual ~AMRLevel ()
virtual void define (AMRLevel *a_coarser_level_ptr, const Box &a_problem_domain, int a_level, int a_ref_ratio)
virtual void define (AMRLevel *a_coarser_level_ptr, const ProblemDomain &a_problem_domain, int a_level, int a_ref_ratio)
virtual Real advance ()=0
virtual void postTimeStep ()=0
virtual void tagCells (IntVectSet &a_tags)=0
virtual void tagCellsInit (IntVectSet &a_tags)=0
virtual void preRegrid (int a_base_level, const Vector< Vector< Box > > &a_new_grids)
virtual void regrid (const Vector< Box > &a_new_grids)=0
virtual void postRegrid (int a_base_level)
virtual void initialGrid (const Vector< Box > &a_new_grids)=0
virtual void postInitialGrid (const bool a_restart)
virtual void initialData ()=0
virtual void postInitialize ()=0
virtual void conclude (int a_step) const
I/O functions
virtual void writeCheckpointHeader (HDF5Handle &a_handle) const =0
virtual void writeCheckpointLevel (HDF5Handle &a_handle) const =0
virtual void readCheckpointHeader (HDF5Handle &a_handle)=0
virtual void readCheckpointLevel (HDF5Handle &a_handle)=0
virtual void writePlotHeader (HDF5Handle &a_handle) const =0
virtual void writePlotLevel (HDF5Handle &a_handle) const =0
virtual void writeCustomPlotFile (const std::string &a_prefix, int a_step) const
Parameter-setting functions
virtual void finerLevelPtr (AMRLevel *a_finer_level_ptr)
virtual void dt (Real a_dt)
virtual void time (Real a_time)
virtual void initialDtMultiplier (Real a_initial_dt_multiplier)
Access functions
virtual Real dt () const
virtual Real time () const
virtual Real initialDtMultiplier () const
virtual const ProblemDomainproblemDomain () const
virtual Vector< Boxboxes () const
bool isDefined () const
bool hasCoarserLevel () const
bool hasFinerLevel () const
virtual int level () const
virtual int refRatio () const
virtual Real computeDt ()=0
virtual Real computeInitialDt ()=0
Vector< AMRLevel * > getAMRLevelHierarchy ()
 Retrieve an array of all of the AMRLevel objects in the entire hierarchy.

Static Public Member Functions

static int verbosity ()
static void verbosity (int a_verbosity)

Protected Attributes

ProblemDomain m_problem_domain
Vector< Boxm_level_grids
int m_level
int m_ref_ratio
Real m_initial_dt_multiplier
Real m_dt
Real m_time
AMRLevelm_coarser_level_ptr
AMRLevelm_finer_level_ptr
bool m_isDefined

Static Protected Attributes

static int s_verbosity


Constructor & Destructor Documentation

AMRLevel::AMRLevel (  ) 

Default constructor.

virtual AMRLevel::~AMRLevel (  )  [virtual]

Destructor.


Member Function Documentation

virtual void AMRLevel::define ( AMRLevel a_coarser_level_ptr,
const Box a_problem_domain,
int  a_level,
int  a_ref_ratio 
) [virtual]

Defines this AMRLevel.

  • a_coarser_level_ptr (not modified): pointer to next coarser level object.
  • a_problem_domain (not modified): problem domain of this level.
  • a_level (not modified): index of this level. The base level is zero.
  • a_ref_ratio (not modified): the refinement ratio between this level and the next finer level.

Reimplemented in EBAMRGodunov.

virtual void AMRLevel::define ( AMRLevel a_coarser_level_ptr,
const ProblemDomain a_problem_domain,
int  a_level,
int  a_ref_ratio 
) [virtual]

Defines this AMRLevel.

  • a_coarser_level_ptr (not modified): pointer to next coarser level object.
  • a_problem_domain (not modified): problem domain of this level.
  • a_level (not modified): index of this level. The base level is zero.
  • a_ref_ratio (not modified): the refinement ratio between this level and the next finer level.

Reimplemented in EBAMRGodunov.

virtual Real AMRLevel::advance (  )  [pure virtual]

Advances this level by one time step. Returns an estimate of the new time step.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::postTimeStep (  )  [pure virtual]

Things to do after advancing this level by one time step.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::tagCells ( IntVectSet a_tags  )  [pure virtual]

Creates tagged cells for dynamic mesh refinement.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::tagCellsInit ( IntVectSet a_tags  )  [pure virtual]

Creates tagged cells for mesh refinement at initialization.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::preRegrid ( int  a_base_level,
const Vector< Vector< Box > > &  a_new_grids 
) [virtual]

Performs any pre-regridding operations which are necessary.

This is not a pure virtual function to preserve compatibility with earlier versions of AMRLevel. The AMRLevel::preRegrid() instantiation is a no-op.

virtual void AMRLevel::regrid ( const Vector< Box > &  a_new_grids  )  [pure virtual]

Redefines this level to have the specified domain a_new_grids.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::postRegrid ( int  a_base_level  )  [virtual]

Performs any post-regridding operations which are necessary.

This is not a pure virtual function to preserve compatibility with earlier versions of AMRLevel. The AMRLevel::postRegrid() instantiation is a no-op.

virtual void AMRLevel::initialGrid ( const Vector< Box > &  a_new_grids  )  [pure virtual]

Initializes this level to have the specified domain a_new_grids.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::postInitialGrid ( const bool  a_restart  )  [virtual]

Performs operations required after the grid has been defined but before data initialization. This will also be called after readCheckpointLevel during a restart procedure with argument a_restart set to true.

Levels are accessed from finest to coarsest. The AMRLevel::postInitialGrid() instantiation is a no-op.

virtual void AMRLevel::initialData (  )  [pure virtual]

Initializes data.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::postInitialize (  )  [pure virtual]

Things to do after initialization.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::conclude ( int  a_step  )  const [virtual]

Override this method to have an AMRLevel subclass perform some operation upon the conclusion of a simulation. This is called when AMR::conclude() is called. The final step is passed to the method.

Parameters:
a_step The last step in the simulation.

virtual void AMRLevel::writeCheckpointHeader ( HDF5Handle a_handle  )  const [pure virtual]

Writes checkpoint header.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::writeCheckpointLevel ( HDF5Handle a_handle  )  const [pure virtual]

Write checkpoint data for this level.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::readCheckpointHeader ( HDF5Handle a_handle  )  [pure virtual]

Reads checkpoint header.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::readCheckpointLevel ( HDF5Handle a_handle  )  [pure virtual]

Reads checkpoint data for this level.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::writePlotHeader ( HDF5Handle a_handle  )  const [pure virtual]

Writes plot header.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::writePlotLevel ( HDF5Handle a_handle  )  const [pure virtual]

Write plot file for this level.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual void AMRLevel::writeCustomPlotFile ( const std::string &  a_prefix,
int  a_step 
) const [virtual]

This allows one to write a plot file in a non-HDF5 format. It is called only at refinement level 0, so AMR data will have to be handled by the implementer.

Parameters:
a_prefix A prefix for the custom plot file name.
a_step The current time step.

virtual void AMRLevel::finerLevelPtr ( AMRLevel a_finer_level_ptr  )  [virtual]

Sets the pointer-to-finer-level member to a_finer_level_ptr.

virtual void AMRLevel::dt ( Real  a_dt  )  [virtual]

Sets the time step to a_dt.

virtual void AMRLevel::time ( Real  a_time  )  [virtual]

Sets the time to a_time.

virtual void AMRLevel::initialDtMultiplier ( Real  a_initial_dt_multiplier  )  [virtual]

Sets the initial dt multiplier to a_initial_dt_multiplier.

virtual Real AMRLevel::dt (  )  const [virtual]

Returns the current value of the time step.

virtual Real AMRLevel::time (  )  const [virtual]

Returns the current value of the time on this level.

virtual Real AMRLevel::initialDtMultiplier (  )  const [virtual]

Returns the initial dt multiplier.

virtual const ProblemDomain& AMRLevel::problemDomain (  )  const [virtual]

Returns the problem domain of this level.

virtual Vector<Box> AMRLevel::boxes (  )  const [virtual]

Returns the domain of this level.

bool AMRLevel::isDefined (  )  const

Returns true if any AMRLevel::define function has been called, false otherwise.

bool AMRLevel::hasCoarserLevel (  )  const

Returns true if a coarser level exists, is defined, and has a grid.

bool AMRLevel::hasFinerLevel (  )  const

Returns true if a finer level exists, is defined, and has a grid.

virtual int AMRLevel::level (  )  const [virtual]

Returns the index of this level

virtual int AMRLevel::refRatio (  )  const [virtual]

Returns the refinement ratio between this level and the next finer level.

virtual Real AMRLevel::computeDt (  )  [pure virtual]

Returns maximum stable time step for this level.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

virtual Real AMRLevel::computeInitialDt (  )  [pure virtual]

Returns maximum stable time step for this level with initial data.

This is a pure virtual function and MUST be defined in the derived class.

Implemented in EBAMRGodunov.

Vector<AMRLevel*> AMRLevel::getAMRLevelHierarchy (  ) 

Retrieve an array of all of the AMRLevel objects in the entire hierarchy.

static int AMRLevel::verbosity (  )  [static]

Returns current verbosity level. Minimum verbosity is 0, for which nothing is printed.

static void AMRLevel::verbosity ( int  a_verbosity  )  [static]

Sets verbosity level to a_verbosity. Minimum verbosity is 0, for which nothing is printed.


Member Data Documentation

int AMRLevel::s_verbosity [static, protected]

int AMRLevel::m_level [protected]

int AMRLevel::m_ref_ratio [protected]

Real AMRLevel::m_dt [protected]

Real AMRLevel::m_time [protected]

bool AMRLevel::m_isDefined [protected]

Reimplemented in EBAMRGodunov.


The documentation for this class was generated from the following file:

Generated on Thu Dec 14 03:42:51 2017 for Chombo + EB by  doxygen 1.5.5