#include <CubedSphereShellPanelCS.H>

Inheritance diagram for CubedSphereShellPanelCS:

Public Member Functions
	CubedSphereShellPanelCS (int nPanel, RealVect &dDX, IntVect &ix)
	constructor More...

void	setFlatMap (bool a_flatMap)

void	setHeight (Real a_height)

Real	getHeight () const

void	setRadius (Real a_radius)

Real	getRadius () const

void	setVerticalMap (RefCountedPtr< Spline1DMapping > a_map)

RefCountedPtr< Spline1DMapping >	getVerticalMap () const

virtual	~CubedSphereShellPanelCS ()

RealVect	realCoord (const RealVect &a_Xi) const
	given coordinate in mapped space, return its location in real space More...

void	realCoord (FArrayBox &a_x, const FArrayBox &a_Xi, const Box &a_box) const
	given coordinates in mapped space, return locations in real space More...

RealVect	mappedCoord (const RealVect &a_x) const
	given coordinate in real space, return its location in the mapped space More...

virtual void	getNodeRealCoordinates (FArrayBox &a_nodeCoords, const Box &a_box) const
	return Cartesian XYZ locations of cell centers More...

virtual void	getCellMappedCoordinates (FArrayBox &a_cellCoords, const Box &a_box) const

virtual void	getFaceMappedCoordinates (FArrayBox &a_faceCoords, const int a_dir, const Box &a_box) const

virtual void	getNodeMappedCoordinates (FArrayBox &a_nodeCoords, const Box &a_box) const

virtual void	getMappedCoordinates (FArrayBox &a_coords, const Box &a_box) const

virtual Real	dXdXi (const RealVect &a_Xi, int a_dirX, int a_dirXi) const
	note that a_Xi is in mapped space. More...

virtual Real	dXidX (const RealVect &a_X, int a_dirX, int a_dirXi) const

virtual int	dimension () const
	returns dimensionality of the space (3, or 2 if flat) More...

virtual void	cellVol (FArrayBox &a_vol, const FluxBox &a_N, const Box &a_box) const
	computes cell volumes More...

virtual void	volFlux (FluxBox &a_volFlux, const FluxBox &a_Nt, const Box &a_box) const
	computes NT * F. More...

virtual void	getN (FluxBox &a_N, const Box &a_box) const
	computes face-centered N More...

virtual void	getAvgJ (FArrayBox &a_avgJ, const Box &a_box) const
	computes cell-averaged J More...

void	getLineMetrics (FArrayBox &a_metrics, const Box &a_box) const
	computes line element metrics in each coordinate direction More...

virtual void	getAvgJ (FArrayBox &a_avgJ, const FluxBox &a_volFlux, const Box &a_box) const
	computes cell-averaged J; ignores a_volFlux More...

virtual void	getAvgJinverse (FluxBox &a_avgJinverse, const Box &a_box) const
	computes face-averaged 1/J More...

virtual Real	pointwiseJ (const RealVect &a_X) const
	Jacobian evaluated at location X in real space. More...

virtual void	pointwiseJ (FArrayBox &a_J, const FArrayBox &a_Xi, const Box &a_box) const
	Jacobian evaluated at locations Xi in mapped space. More...

virtual void	computeDivergence (FArrayBox &a_divF, const FluxBox &a_F, const FluxBox &a_N, const Box &a_box, Interval &divInterval) const
	returns integral of divergence over mapped-grid cells More...

virtual Real	getN (const RealVect &a_Xi, int a_s, int a_d, int a_d1) const
	this evaluates the script N values from equation 12 in Phil's notes More...

virtual Real	getNMatrixEntry (const RealVect &a_Xi, int a_s, int a_d, int a_d1, int a_row, int a_column) const
	note that a_Xi is in mapped space. More...

void	pointTransformEquiangularToLonLat (const RealVect &a_xi, RealVect &a_rllXi) const

void	pointTransformEquiangularToCartesian (const RealVect &a_xi, Real *a_xyz) const

void	fabTransformEquiangularToLonLat (const FArrayBox &a_xiFab, FArrayBox &a_rllXiFab) const

void	fabTransformEquiangularToCartesian (const FArrayBox &a_xiFab, FArrayBox &a_xyzFab) const

void	vectorTransformEquiangularToCartesian (const RealVect &a_xi, const Real a_vecCS, Real a_vecXYZ) const

void	vectorTransformCartesianToEquiangular (const RealVect &a_xi, const Real a_vecXYZ, Real a_vecCS) const

void	vectorTransformLatLonToEquiangular (const RealVect &a_xi, const RealVect &a_vecRLL, RealVect &a_vecCS) const

void	fabVectorTransformLatLonToEquiangular (const FArrayBox &a_xiFab, const FArrayBox &a_vecRLLFab, FArrayBox &a_vecCSFab) const

void	fabVectorTransformEquiangularToLatLon (const FArrayBox &a_xiFab, const FArrayBox &a_vecCSFab, FArrayBox &a_vecRLLFab) const

virtual void	vectorTransformMappedToRealCenterFab (FArrayBox &a_vectorFab) const
	transform a FAB of SpaceDim-vectors from mapped-coordinate basis to real-coordinate basis at cell centers More...

virtual void	vectorTransformRealToMappedCenterFab (FArrayBox &a_vectorFab) const
	transform a FAB of SpaceDim-vectors from real-coordinate basis to mapped-coordinate basis at cell centers More...

virtual void	contravariantMetric (FArrayBox &a_metric, int a_dir) const
	return row a_idir of contravariant metric More...

virtual void	orthonormalize (const FArrayBox &a_csFab, FArrayBox &a_orthoFab, const Box &a_box, int a_idir, const IntVect &a_csComps, const IntVect &a_orthoComps) const
	convert components in a_csComps of vector a_csFab in coordinate-system basis to components in a_orthoComps of vector a_orthoFab in orthonormal basis, at points with indices in a_box, on lines where direction a_idir is constant More...

virtual void	deorthonormalize (const FArrayBox &a_orthoFab, FArrayBox &a_csFab, const Box &a_box, int a_idir, const IntVect &a_orthoComps, const IntVect &a_csComps) const
	convert components in a_orthoComps of vector a_orthoFab in orthonormal basis to components in a_csComps of vector a_csFab in coordinate-system basis, at points with indices in a_box, on lines where direction a_idir is constant More...

virtual void	orthonormalizeVectorFluxes (FArrayBox &a_fluxFab, const Box &a_box, const Interval &a_vectorIntv) const
	convert from fluxes in block frame in component directions to fluxes in orthonormal frame in normal and tangential directions More...

virtual void	deorthonormalizeVectorFluxes (FArrayBox &a_fluxFab, const Box &a_box, const Interval &a_vectorIntv) const
	convert from fluxes in orthonormal frame in normal and tangential directions to fluxes in block frame in component directions More...

virtual void	orthonormalizeVectorFluxes (FluxBox &a_flux, const Interval &a_vectorIntv) const
	convert from fluxes in block frame in component directions to fluxes in orthonormal frame in normal and tangential directions More...

virtual void	deorthonormalizeVectorFluxes (FluxBox &a_flux, const Interval &a_vectorIntv) const
	convert from fluxes in orthonormal frame in normal and tangential directions to fluxes in block frame in component directions More...

virtual void	curlRadial (const FArrayBox &a_vecFab, FArrayBox &a_curlFab, const Box &a_box) const
	return cell-centered radial component of curl of a_vecFab, which has SpaceDim components and is cell-centered. More...

virtual void	curlSpherical (const FArrayBox &a_vecRLLFab, FArrayBox &a_curlFab, const Box &a_box) const
	return radial component of curl of a_vecRLLFab, which has SpaceDim components and is cell-centered, by converting to spherical coordinates. More...

virtual void	divSpherical (const FArrayBox &a_vecRLLFab, FluxBox &a_divFlux, const Box &a_box) const
	return face-centered divergence of a_vecRLLFab, which has SpaceDim components and is cell-centered, by converting to spherical coordinates. More...

virtual void	gradient (const FArrayBox &a_fab, FArrayBox &a_gradFab, const Box &a_box) const
	return cell-centered gradient of a_fab, with derivatives of all components in the alpha direction, then all in beta direction, then all in r direction. More...

virtual void	magnitude (const FArrayBox &a_vecFab, FArrayBox &a_magFab, const Box &a_box) const
	return magnitude of SpaceDim-vector with all components (in UNIT basis) in alpha direction, then all in beta direction, then all in r direction. More...

virtual void	magnitudeNatural (const FArrayBox &a_vecFab, FArrayBox &a_magFab, const Box &a_box) const
	return magnitude of SpaceDim-vector with components in NATURAL basis. More...

int	panel () const
	access function to panel id More...

void	getContravariantMetricJAverage (FArrayBox &a_matrixFab, const int a_dir) const
	returns G^{ij}J averaged over faces of direction a_dir More...

Public Member Functions inherited from NewFourthOrderCoordSys
	NewFourthOrderCoordSys ()
	default constructor More...

virtual	~NewFourthOrderCoordSys ()

virtual void	mappedCoord (FArrayBox &a_Xi, const FArrayBox &a_x, const Box &a_box) const
	given coordinate in real space, return its location in the mapped space More...

virtual void	dXdXi (FArrayBox &a_dxdXi, const FArrayBox &a_Xi, int a_destComp, int a_dirX, int a_dirXi, const Box &a_box) const
	note that a_X is in mapped space. More...

virtual int	getNumN () const
	returns number of components in the metric term matrix (N) More...

virtual int	getNcomponent (const int a_row, const int a_col) const
	index function into face-centered metric terms More...

virtual void	getAvgJinverse (FluxBox &a_avgJinverse, const FArrayBox &a_avgJ, const Box &a_box) const
	computes cell-averaged 1/J, using pre-computed cell-avg J More...

virtual void	computeMetricTermProductAverage (FluxBox &a_product, const FluxBox &a_F, const FluxBox &a_N, const int a_NNumComp, const FluxBox &a_FforGrad, const Box &a_box, bool a_fourthOrder=true, Interval a_varIntervalProduct=Interval(), Interval a_varIntervalF=Interval(), int a_fluxSpaceContiguous=1, const ProblemDomain *const a_problemDomainPtr=NULL) const
	Computes 4th-order average of product = N^T*F. F can be a flux dyad. More...

virtual void	computeMetricTermProductAverage (FluxBox &a_product, const FluxBox &a_F, const FluxBox &a_N, const FluxBox &a_FforGrad, const Box &a_box, bool a_fourthOrder=true) const
	computes 4th-order average of product = N^T*F. F is vector of a scalar More...

virtual void	computeMetricTermProductAverage (FluxBox &a_product, const FluxBox &a_F, const FluxBox &a_N, const Box &a_box, bool a_fourthOrder=true) const
	computes 4th-order average of product = N^T*F. F is vector of a scalar More...

void	magnitudeN (FluxBox &a_NMag, const FluxBox &a_N, const Box &a_box) const
	Computes magnitude of <N^T> on each face. More...

virtual void	computeNJinverse (FluxBox &a_NJinverse, const FluxBox &a_Jinverse, const FluxBox &a_N, const Box &a_cellBox) const
	given N and Jinverse, computes N/J More...

virtual const RealVect &	dx () const
	access function to simplify things – returns mapped-space cell spacing More...

virtual void	integrateScriptN (FArrayBox &a_scrN, const int a_dir0, const int a_dir1, const Box &a_box) const

virtual void	incrementFaceMetricWithEdgeTerm (FArrayBox &a_faceMetrics, int a_faceDir, int a_edgeDir, const Box &a_box, const Side::LoHiSide &a_side) const

virtual void	computeTransverseFaceMetric (FArrayBox &a_faceMetrics, const Box &a_box, int a_faceDir, int a_dDir) const

virtual void	computeTangentialGrad (FluxBox &a_gradPhi, const FluxBox &a_phiFace, const Box &a_box) const

virtual int	tanGradComp (const int a_faceDir, const int a_tanDir, const int a_comp) const

virtual void	orthonormalize (FluxBox &a_flux, const Interval &a_vectorIntv) const
	convert vector components (in a_vectorIntv) of a_flux to orthonormal frame to that of this block More...

virtual void	orthonormalize (FArrayBox &a_fluxFab, const Interval &a_vectorIntv) const
	overwrite vector components (in a_vectorIntv) of a_fluxFab with orthonormalized More...

virtual void	deorthonormalize (FluxBox &a_flux, const Interval &a_vectorIntv) const
	convert vector components (in a_vectorIntv) of a_flux from orthonormal frame to that of this block More...

virtual void	deorthonormalize (FArrayBox &a_fluxFab, const Interval &a_vectorIntv) const
	overwrite vector components (in a_vectorIntv) of a_fluxFab with deorthonormalized More...

Public Member Functions inherited from NewCoordSys
	NewCoordSys ()
	default constructor More...

virtual	~NewCoordSys ()

virtual void	getCenterMappedCoordinates (FArrayBox &a_Xi, const Box &a_box) const
	given indices in a_box, return centers of cells (or of faces, or of edges) in mapped coordinates. The function does the right thing based on the centering of a_box, which must be the same centering as a_Xi. More...

virtual RealVect	centerMappedCoordinates (const IntVect &a_iv) const
	given indices, return centers of cells in mapped coordinates More...

virtual VectorTransformation	vectorTransformationMappedToReal (const RealVect &a_Xi) const
	return matrix that transforms vector components from mapped space to real space at point a_Xi in mapped space More...

virtual VectorTransformation	vectorTransformationRealToMapped (const RealVect &a_Xi) const
	return matrix that transforms vector components from real space to mapped space at point a_Xi in mapped space More...

virtual VectorTransformation	vectorTransformationMappedToRealCenter (const IntVect &a_iv) const
	return matrix that transforms vector components from mapped space to real space at center of cell a_iv More...

virtual VectorTransformation	vectorTransformationRealToMappedCenter (const IntVect &a_iv) const
	return matrix that transforms vector components from real space to mapped space at center of cell a_iv More...

virtual void	vectorTransformMappedToRealAvgFab (FArrayBox &a_vectorFab, const FArrayBox &a_gradVectorFab) const
	transform a FAB of SpaceDim-vectors from mapped-coordinate basis to real-coordinate basis, averaged over cells More...

virtual void	vectorTransformRealToMappedAvgFab (FArrayBox &a_vectorFab, const FArrayBox &a_gradVectorFab) const
	transform a FAB of SpaceDim-vectors from real-coordinate basis to mapped-coordinate basis, averaged over cells More...

virtual void	setTime (const Real &a_time) const
	Set time for moving grids. More...

Protected Attributes
int	m_nPanel

int	m_realDim

Real	m_height

Real	m_radius

bool	m_flatMap

RefCountedPtr< Spline1DMapping >	m_verticalMap

IntVect	m_ix

Protected Attributes inherited from NewFourthOrderCoordSys
RealVect	m_dx

Interval	m_volInterval

EdgeQuadrature *	m_quadraturePtr

Protected Attributes inherited from NewCoordSys
Real	m_time
	Const is already well entrenched. More...

Additional Inherited Members
Static Public Member Functions inherited from NewFourthOrderCoordSys
static const IntVect &	metricsCompDir (const int a_iDir)
	Same as getNcomponent but returns an IntVect for an 'a_col' (direction) More...

Protected Member Functions inherited from NewCoordSys
virtual void	vectorTransformInternalAvgFab (FArrayBox &a_vectorFab, const FArrayBox &a_gradVectorFab, const BaseFab< VectorTransformation > &a_tfmCenterFab) const
	internal function to transform a FAB of SpaceDim-vectors from one basis to another, averaged over cells, given BaseFab of vector transformations at cell centers More...

Detailed Description

Basic single-panel cubed sphere Coordinates Multiblock coordinate system for single-panel cubed sphere shell with variable-thickness spherical layers The CubedSphereShellPanelCS class implements the NewFourthOrderCoordSys class for cubed sphere panels in equiangular coordinates, with variable-thickness layers making up the shell in the r direction, total r thickness "height". NOTE: Assumes a "thin atmosphere" approximation which ignores the r dependencies of the horizontal grid metrics NOTE: For 2D, hdf5 output uses sphere radius = 1, and for 3D r [1,2]

Constructor & Destructor Documentation

CubedSphereShellPanelCS::CubedSphereShellPanelCS	(	int	nPanel,
		RealVect &	dDX,
		IntVect &	ix
	)

constructor

nPanel (0-3 Equatorial, 4 North Pole, 5 South Pole) and defines the panel on the cubed sphere described by this object. dDX The cell spacing on this panel. ix Index of the bottom-left edge of this panel in index space.

virtual CubedSphereShellPanelCS::~CubedSphereShellPanelCS ( )

virtual

Destructor.

Member Function Documentation

void CubedSphereShellPanelCS::setFlatMap ( bool a_flatMap )

void CubedSphereShellPanelCS::setHeight ( Real a_height )

inline

References CH_assert, and m_height.

Real CubedSphereShellPanelCS::getHeight ( ) const

inline

References CH_assert, and m_height.

void CubedSphereShellPanelCS::setRadius ( Real a_radius )

inline

References CH_assert, and m_radius.

Real CubedSphereShellPanelCS::getRadius ( ) const

inline

References CH_assert, and m_radius.

void CubedSphereShellPanelCS::setVerticalMap ( RefCountedPtr< Spline1DMapping > a_map )

inline

References m_verticalMap.

RefCountedPtr<Spline1DMapping> CubedSphereShellPanelCS::getVerticalMap ( ) const

inline

References CH_assert, RefCountedPtr< T, OP >::isNull(), and m_verticalMap.

RealVect CubedSphereShellPanelCS::realCoord ( const RealVect & a_Xi ) const

virtual

given coordinate in mapped space, return its location in real space

Implements NewFourthOrderCoordSys.

void CubedSphereShellPanelCS::realCoord	(	FArrayBox &	a_x,
		const FArrayBox &	a_Xi,
		const Box &	a_box
	)		const

virtual

given coordinates in mapped space, return locations in real space

Reimplemented from NewFourthOrderCoordSys.

RealVect CubedSphereShellPanelCS::mappedCoord ( const RealVect & a_x ) const

virtual

given coordinate in real space, return its location in the mapped space

Implements NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::getNodeRealCoordinates	(	FArrayBox &	a_nodeCoords,
		const Box &	a_box
	)		const

virtual

return Cartesian XYZ locations of cell centers

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::getCellMappedCoordinates	(	FArrayBox &	a_cellCoords,
		const Box &	a_box
	)		const

virtual

virtual void CubedSphereShellPanelCS::getFaceMappedCoordinates	(	FArrayBox &	a_faceCoords,
		const int	a_dir,
		const Box &	a_box
	)		const

virtual

virtual void CubedSphereShellPanelCS::getNodeMappedCoordinates	(	FArrayBox &	a_nodeCoords,
		const Box &	a_box
	)		const

virtual

virtual void CubedSphereShellPanelCS::getMappedCoordinates	(	FArrayBox &	a_coords,
		const Box &	a_box
	)		const

virtual

virtual Real CubedSphereShellPanelCS::dXdXi	(	const RealVect &	a_Xi,
		int	a_dirX,
		int	a_dirXi
	)		const

virtual

note that a_Xi is in mapped space.

Implements NewFourthOrderCoordSys.

virtual Real CubedSphereShellPanelCS::dXidX	(	const RealVect &	a_X,
		int	a_dirX,
		int	a_dirXi
	)		const

virtual

virtual int CubedSphereShellPanelCS::dimension ( ) const

inlinevirtual

returns dimensionality of the space (3, or 2 if flat)

Reimplemented from NewCoordSys.

References m_realDim.

virtual void CubedSphereShellPanelCS::cellVol	(	FArrayBox &	a_vol,
		const FluxBox &	a_N,
		const Box &	a_box
	)		const

virtual

computes cell volumes

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::volFlux	(	FluxBox &	a_volFlux,
		const FluxBox &	a_Nt,
		const Box &	a_box
	)		const

virtual

computes NT * F.

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::getN	(	FluxBox &	a_N,
		const Box &	a_box
	)		const

virtual

computes face-centered N

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::getAvgJ	(	FArrayBox &	a_avgJ,
		const Box &	a_box
	)		const

virtual

computes cell-averaged J

Reimplemented from NewFourthOrderCoordSys.

void CubedSphereShellPanelCS::getLineMetrics	(	FArrayBox &	a_metrics,
		const Box &	a_box
	)		const

computes line element metrics in each coordinate direction

virtual void CubedSphereShellPanelCS::getAvgJ	(	FArrayBox &	a_avgJ,
		const FluxBox &	a_volFlux,
		const Box &	a_box
	)		const

virtual

computes cell-averaged J; ignores a_volFlux

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::getAvgJinverse	(	FluxBox &	a_avgJinverse,
		const Box &	a_box
	)		const

virtual

computes face-averaged 1/J

Reimplemented from NewFourthOrderCoordSys.

virtual Real CubedSphereShellPanelCS::pointwiseJ ( const RealVect & a_X ) const

virtual

Jacobian evaluated at location X in real space.

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::pointwiseJ	(	FArrayBox &	a_J,
		const FArrayBox &	a_Xi,
		const Box &	a_box
	)		const

virtual

Jacobian evaluated at locations Xi in mapped space.

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::computeDivergence	(	FArrayBox &	a_divF,
		const FluxBox &	a_F,
		const FluxBox &	a_N,
		const Box &	a_box,
		Interval &	divInterval
	)		const

virtual

returns integral of divergence over mapped-grid cells

Reimplemented from NewCoordSys.

virtual Real CubedSphereShellPanelCS::getN	(	const RealVect &	a_Xi,
		int	a_s,
		int	a_d,
		int	a_d1
	)		const

virtual

this evaluates the script N values from equation 12 in Phil's notes

note that a_Xi is in mapped space.

Reimplemented from NewFourthOrderCoordSys.

virtual Real CubedSphereShellPanelCS::getNMatrixEntry	(	const RealVect &	a_Xi,
		int	a_s,
		int	a_d,
		int	a_d1,
		int	a_row,
		int	a_column
	)		const

virtual

note that a_Xi is in mapped space.

Reimplemented from NewFourthOrderCoordSys.

void CubedSphereShellPanelCS::pointTransformEquiangularToLonLat	(	const RealVect &	a_xi,
		RealVect &	a_rllXi
	)		const

transform a point from mapped-coordinate basis to longitude-latitude coordinate basis

void CubedSphereShellPanelCS::pointTransformEquiangularToCartesian	(	const RealVect &	a_xi,
		Real *	a_xyz
	)		const

transform a point from mapped-coordinate basis to Cartesian coordinate basis

void CubedSphereShellPanelCS::fabTransformEquiangularToLonLat	(	const FArrayBox &	a_xiFab,
		FArrayBox &	a_rllXiFab
	)		const

transform a FAB of points from mapped-coordinate basis to latitude-longitude coordinate basis

void CubedSphereShellPanelCS::fabTransformEquiangularToCartesian	(	const FArrayBox &	a_xiFab,
		FArrayBox &	a_xyzFab
	)		const

transform a FAB of points from mapped-coordinate basis to Cartesian coordinate basis

void CubedSphereShellPanelCS::vectorTransformEquiangularToCartesian	(	const RealVect &	a_xi,
		const Real *	a_vecCS,
		Real *	a_vecXYZ
	)		const

transform a vector from mapped-coordinate basis to real-coordinate basis, given a point a_xi in mapped space

void CubedSphereShellPanelCS::vectorTransformCartesianToEquiangular	(	const RealVect &	a_xi,
		const Real *	a_vecXYZ,
		Real *	a_vecCS
	)		const

transform a vector from real-coordinate basis to mapped-coordinate basis, given a point a_xi in mapped space

void CubedSphereShellPanelCS::vectorTransformLatLonToEquiangular	(	const RealVect &	a_xi,
		const RealVect &	a_vecRLL,
		RealVect &	a_vecCS
	)		const

transform a vector from longitude-latitude coordinate basis to mapped-coordinate basis

void CubedSphereShellPanelCS::fabVectorTransformLatLonToEquiangular	(	const FArrayBox &	a_xiFab,
		const FArrayBox &	a_vecRLLFab,
		FArrayBox &	a_vecCSFab
	)		const

transform a FAB of vectors from latitude-longitude coordinate basis to mapped-coordinate basis

void CubedSphereShellPanelCS::fabVectorTransformEquiangularToLatLon	(	const FArrayBox &	a_xiFab,
		const FArrayBox &	a_vecCSFab,
		FArrayBox &	a_vecRLLFab
	)		const

transform a FAB of vectors from mapped-coordinate basis to latitude-longitude coordinate basis

virtual void CubedSphereShellPanelCS::vectorTransformMappedToRealCenterFab ( FArrayBox & a_vectorFab ) const

virtual

transform a FAB of SpaceDim-vectors from mapped-coordinate basis to real-coordinate basis at cell centers

Reimplemented from NewCoordSys.

virtual void CubedSphereShellPanelCS::vectorTransformRealToMappedCenterFab ( FArrayBox & a_vectorFab ) const

virtual

transform a FAB of SpaceDim-vectors from real-coordinate basis to mapped-coordinate basis at cell centers

Reimplemented from NewCoordSys.

virtual void CubedSphereShellPanelCS::contravariantMetric	(	FArrayBox &	a_metric,
		int	a_dir
	)		const

virtual

return row a_idir of contravariant metric

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::orthonormalize	(	const FArrayBox &	a_csFab,
		FArrayBox &	a_orthoFab,
		const Box &	a_box,
		int	a_idir,
		const IntVect &	a_csComps,
		const IntVect &	a_orthoComps
	)		const

virtual

convert components in a_csComps of vector a_csFab in coordinate-system basis to components in a_orthoComps of vector a_orthoFab in orthonormal basis, at points with indices in a_box, on lines where direction a_idir is constant

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::deorthonormalize	(	const FArrayBox &	a_orthoFab,
		FArrayBox &	a_csFab,
		const Box &	a_box,
		int	a_idir,
		const IntVect &	a_orthoComps,
		const IntVect &	a_csComps
	)		const

virtual

convert components in a_orthoComps of vector a_orthoFab in orthonormal basis to components in a_csComps of vector a_csFab in coordinate-system basis, at points with indices in a_box, on lines where direction a_idir is constant

Reimplemented from NewFourthOrderCoordSys.

virtual void CubedSphereShellPanelCS::orthonormalizeVectorFluxes	(	FArrayBox &	a_fluxFab,
		const Box &	a_box,
		const Interval &	a_vectorIntv
	)		const

virtual

convert from fluxes in block frame in component directions to fluxes in orthonormal frame in normal and tangential directions

virtual void CubedSphereShellPanelCS::deorthonormalizeVectorFluxes	(	FArrayBox &	a_fluxFab,
		const Box &	a_box,
		const Interval &	a_vectorIntv
	)		const

virtual

convert from fluxes in orthonormal frame in normal and tangential directions to fluxes in block frame in component directions

virtual void CubedSphereShellPanelCS::orthonormalizeVectorFluxes	(	FluxBox &	a_flux,
		const Interval &	a_vectorIntv
	)		const

virtual

convert from fluxes in block frame in component directions to fluxes in orthonormal frame in normal and tangential directions

virtual void CubedSphereShellPanelCS::deorthonormalizeVectorFluxes	(	FluxBox &	a_flux,
		const Interval &	a_vectorIntv
	)		const

virtual

convert from fluxes in orthonormal frame in normal and tangential directions to fluxes in block frame in component directions

virtual void CubedSphereShellPanelCS::curlRadial	(	const FArrayBox &	a_vecFab,
		FArrayBox &	a_curlFab,
		const Box &	a_box
	)		const

virtual

return cell-centered radial component of curl of a_vecFab, which has SpaceDim components and is cell-centered.

virtual void CubedSphereShellPanelCS::curlSpherical	(	const FArrayBox &	a_vecRLLFab,
		FArrayBox &	a_curlFab,
		const Box &	a_box
	)		const

virtual

return radial component of curl of a_vecRLLFab, which has SpaceDim components and is cell-centered, by converting to spherical coordinates.

virtual void CubedSphereShellPanelCS::divSpherical	(	const FArrayBox &	a_vecRLLFab,
		FluxBox &	a_divFlux,
		const Box &	a_box
	)		const

virtual

return face-centered divergence of a_vecRLLFab, which has SpaceDim components and is cell-centered, by converting to spherical coordinates.

virtual void CubedSphereShellPanelCS::gradient	(	const FArrayBox &	a_fab,
		FArrayBox &	a_gradFab,
		const Box &	a_box
	)		const

virtual

return cell-centered gradient of a_fab, with derivatives of all components in the alpha direction, then all in beta direction, then all in r direction.

virtual void CubedSphereShellPanelCS::magnitude	(	const FArrayBox &	a_vecFab,
		FArrayBox &	a_magFab,
		const Box &	a_box
	)		const

virtual

return magnitude of SpaceDim-vector with all components (in UNIT basis) in alpha direction, then all in beta direction, then all in r direction.

virtual void CubedSphereShellPanelCS::magnitudeNatural	(	const FArrayBox &	a_vecFab,
		FArrayBox &	a_magFab,
		const Box &	a_box
	)		const

virtual

return magnitude of SpaceDim-vector with components in NATURAL basis.

int CubedSphereShellPanelCS::panel ( ) const

inline

access function to panel id

References m_nPanel.

void CubedSphereShellPanelCS::getContravariantMetricJAverage	(	FArrayBox &	a_matrixFab,
		const int	a_dir
	)		const

returns G^{ij}J averaged over faces of direction a_dir

Member Data Documentation

int CubedSphereShellPanelCS::m_nPanel

protected

Referenced by panel().

int CubedSphereShellPanelCS::m_realDim

protected

Referenced by dimension().

Real CubedSphereShellPanelCS::m_height

protected

Referenced by getHeight(), and setHeight().

Real CubedSphereShellPanelCS::m_radius

protected

Referenced by getRadius(), and setRadius().

bool CubedSphereShellPanelCS::m_flatMap

protected

RefCountedPtr<Spline1DMapping> CubedSphereShellPanelCS::m_verticalMap

protected

Referenced by getVerticalMap(), and setVerticalMap().

IntVect CubedSphereShellPanelCS::m_ix

protected

The documentation for this class was generated from the following file:

CubedSphereShellPanelCS.H

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation