ParticleIO.H

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/* _______              __
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//
// This software is copyright (C) by the Lawrence Berkeley
// National Laboratory.  Permission is granted to reproduce
// this software for non-commercial purposes provided that
// this notice is left intact.
// 
// It is acknowledged that the U.S. Government has rights to
// this software under Contract DE-AC03-765F00098 between
// the U.S.  Department of Energy and the University of
// California.
//
// This software is provided as a professional and academic
// contribution for joint exchange. Thus it is experimental,
// is provided ``as is'', with no warranties of any kind
// whatsoever, no support, no promise of updates, or printed
// documentation. By using this software, you acknowledge
// that the Lawrence Berkeley National Laboratory and
// Regents of the University of California shall have no
// liability with respect to the infringement of other
// copyrights by any part of this software.
//
// DFMartin, April 25, 2004

#ifndef _PARTICLEIO_
#define _PARTICLEIO_
#include "REAL.H"

#ifndef WRAPPER

#include "LevelData.H"
#include "REAL.H"
#include "Vector.H"
#include "FArrayBox.H"
#include "BinFab.H"
#include "BinItem.H"
#include "IntVectSet.H"
#include <string>
using std::string;
using std::istream;
#endif

#ifdef HDF5


void
WriteAMRHierarchyHDF5(const string& filename,                             
                      const Vector<DisjointBoxLayout>& a_vectGrids, 
                      const Vector<LevelData<FArrayBox>* > & a_vectData, 
                      const Vector<LevelData<BinFab<BinItem>* >* >& a_vectParticles,
                      const Vector<string>& a_vectNames,                 
                      const Box& a_domain,                               
                      const Real& a_dx,                                         
                      const Real& a_dt,                                         
                      const Real& a_time,
                      const Vector<int>& a_vectRatio,                           
                      const int& a_numLevels);



void
WriteAMRHierarchyHDF5(HDF5Handle& handle,                             
                      const Vector<DisjointBoxLayout>& a_vectGrids, 
                      const Vector<LevelData<FArrayBox>* > & a_vectData, 
                      const Vector<LevelData<BinFab<BinItem>* >* >& a_vectParticles,
                      const Vector<string>& a_vectNames,                 
                      const Box& a_domain,                               
                      const Real& a_dx,                                         
                      const Real& a_dt,                                         
                      const Real& a_time,
                      const Vector<int>& a_vectRatio,                           
                      const int& a_numLevels);



void
WriteAMRHierarchyHDF5(const string& filename,                             
                      const Vector<DisjointBoxLayout>& a_vectGrids, 
                      const Vector<LevelData<FArrayBox>* > & a_vectData, 
                      const Vector<LevelData<BinFab<BinItem>* >* >& a_vectParticles,
                      const Box& a_domain,                               
                      const Vector<int>& a_vectRatio,                           
                      const int& a_numLevels);




void
WriteAMRHierarchyHDF5(HDF5Handle& handle, 
                      const Vector<DisjointBoxLayout>& a_vectGrids, 
                      const Vector<LevelData<FArrayBox>* > & a_vectData, 
                      const Vector<LevelData<BinFab<BinItem>* >* >& a_vectParticles,
                      const Box& a_domain,                               
                      const Vector<int>& a_vectRatio,                           
                      const int& a_numLevels);





void
writeParticleFAB(const BinFab<BinItem>* a_dataPtr);


void
viewParticleFAB(const BinFab<BinItem>* a_dataPtr);


void
writeParticleFABname(const BinFab<BinItem>* a_dataPtr,
                     const char*      a_filename);



void
writeParticleLevel(const LevelData<BinFab<BinItem> >* a_dataPtr);


void
viewParticleLevel(const LevelData<BinFab<BinItem> >* a_dataPtr);


void
viewParticleLevelNoGhost(const LevelData<BinFab<BinItem> >* a_dataPtr);



void
writeParticleLevelname(const LevelData<BinFab<BinItem> >* a_dataPtr,
                       const char*                 a_filename);


void
WritePartialAMRHierarchyHDF5(const string& filename,
                             const Vector<DisjointBoxLayout>& a_vectGrids, 
                             const Vector<LevelData<FArrayBox>* > & a_vectData,
                             const Vector<LevelData<BinFab<BinItem>* >* >& a_vectParticles,
                             const Vector<string>& a_vectNames,
                             const Box& a_baseDomain,
                             const Real& a_baseDx,
                             const Real& a_dt,
                             const Real& a_time,
                             const Vector<int>& a_vectRatio,
                             const Interval& a_levels);




int 
writeParticlesHDF5(HDF5Handle& a_handle,
                   const List<BinItem>& a_particleList);


int WriteHDFVectorChunk( hid_t a_gid ,std::vector<Real> const & a_vdata,
                         hid_t a_dataset, hid_t a_dataspace, 
                         size_t & a_offset );


#endif // HDF5

// //write a fab out in ascii very slowly
 extern void 
 writeAFabASCII(std::ostream& os, const FArrayBox& fab);


 void writeAFabASCII(std::ostream& os, const FArrayBox& fab);


// ///
 void
WriteAMRHierarchyASCII(const string& filename,                             
                       const Vector<DisjointBoxLayout>& a_vectGrids, 
                       const Vector<LevelData<FArrayBox>* > & a_vectData, 
                       const Vector<LevelData<BinFab<BinItem>* >* >& a_vectParticles,
                       const Vector<string>& a_vectNames,                 
                       const Box& a_domain,                               
                       const Real& a_dx,
                       const Real& a_dt,
                       const Real& a_time,
                       const Vector<int>& a_vectRatio,
                       const int& a_numLevels);




int 
incrementParticleList(List<BinItem>& a_particleList,
                      const BaseFab<BinItem>& a_binFab);


#endif // multiple-include preventer

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