HDF5 C++ API Reference Manual

 

 

h5group.cpp

This example shows how to work with groups.

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the files COPYING and Copyright.html.  COPYING can be found at the root   *
 * of the source code distribution tree; Copyright.html can be found at the  *
 * root level of an installed copy of the electronic HDF5 document set and   *
 * is linked from the top-level documents page.  It can also be found at     *
 * http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have          *
 * access to either file, you may request a copy from [email protected].     *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/*
 * This example creates a group in the file and dataset in the group.
 * Hard link to the group object is created and the dataset is accessed
 * under different names.
 * Iterator function is used to find the object names in the root group.
 * Note that the C++ API iterator function is not completed yet, thus
 * the C version is used in this example.
 */

#ifdef OLD_HEADER_FILENAME
#include <iostream.h>
#else
#include <iostream>
#endif
#include <string>

#ifndef H5_NO_NAMESPACE
#ifndef H5_NO_STD
    using std::cout;
    using std::endl;
#endif  // H5_NO_STD
#endif

#include "H5Cpp.h"

#ifndef H5_NO_NAMESPACE
    using namespace H5;
#endif

const H5std_string FILE_NAME( "Group.h5" );
const int          RANK = 2;

// Operator function
extern "C" herr_t file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo,
    void *opdata);

int main(void)
{

    hsize_t  dims[2];
    hsize_t  cdims[2];

    // Try block to detect exceptions raised by any of the calls inside it
    try
    {
        /*
         * Turn off the auto-printing when failure occurs so that we can
         * handle the errors appropriately
         */
        Exception::dontPrint();

        /*
         * Create the named file, truncating the existing one if any,
         * using default create and access property lists.
         */
        H5File *file = new H5File( FILE_NAME, H5F_ACC_TRUNC );

        /*
         * Create a group in the file
         */
        Group* group = new Group( file->createGroup( "/Data" ));

        /*
         * Create dataset "Compressed Data" in the group using absolute
         * name. Dataset creation property list is modified to use
         * GZIP compression with the compression effort set to 6.
         * Note that compression can be used only when dataset is chunked.
         */
        dims[0] = 1000;
        dims[1] = 20;
        cdims[0] = 20;
        cdims[1] = 20;
        DataSpace *dataspace = new DataSpace(RANK, dims); // create new dspace
        DSetCreatPropList ds_creatplist;  // create dataset creation prop list
        ds_creatplist.setChunk( 2, cdims );  // then modify it for compression
        ds_creatplist.setDeflate( 6 );

        /*
         * Create the first dataset.
         */
        DataSet* dataset = new DataSet(file->createDataSet(
                "/Data/Compressed_Data", PredType::NATIVE_INT,
                *dataspace, ds_creatplist ));

        /*
         * Close the first dataset.
         */
        delete dataset;
        delete dataspace;

        /*
         * Create the second dataset.
         */
        dims[0] = 500;
        dims[1] = 20;
        dataspace = new DataSpace(RANK, dims); // create second dspace
        dataset = new DataSet(file->createDataSet("/Data/Float_Data",
                        PredType::NATIVE_FLOAT, *dataspace));

        delete dataset;
        delete dataspace;
        delete group;
        delete file;

        /*
         * Now reopen the file and group in the file.
         */
        file = new H5File(FILE_NAME, H5F_ACC_RDWR);
        group = new Group(file->openGroup("Data"));

        /*
         * Access "Compressed_Data" dataset in the group.
         */
        try {  // to determine if the dataset exists in the group
            dataset = new DataSet( group->openDataSet( "Compressed_Data" ));
        }
        catch( GroupIException not_found_error ) {
            cout << " Dataset is not found." << endl;
        }
        cout << "dataset \"/Data/Compressed_Data\" is open" << endl;

        /*
         * Close the dataset.
         */
        delete dataset;

        /*
         * Create hard link to the Data group.
         */
        file->link( H5L_TYPE_HARD, "Data", "Data_new" );

        /*
         * We can access "Compressed_Data" dataset using created
         * hard link "Data_new".
         */
        try {  // to determine if the dataset exists in the file
            dataset = new DataSet(file->openDataSet( "/Data_new/Compressed_Data" ));
        }
        catch( FileIException not_found_error )
        {
            cout << " Dataset is not found." << endl;
        }
        cout << "dataset \"/Data_new/Compressed_Data\" is open" << endl;

        /*
         * Close the dataset.
         */
        delete dataset;

        /*
         * Use iterator to see the names of the objects in the file
         * root directory.
         */
        cout << endl << "Iterating over elements in the file" << endl;
        herr_t idx = H5Literate(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
        cout << endl;

        /*
         * Unlink  name "Data" and use iterator to see the names
         * of the objects in the file root direvtory.
         */
        cout << "Unlinking..." << endl;
        try {  // attempt to unlink the dataset
            file->unlink( "Data" );
        }
        catch( FileIException unlink_error )
        {
            cout << " unlink failed." << endl;
        }
        cout << "\"Data\" is unlinked" << endl;

        cout << endl << "Iterating over elements in the file again" << endl;
        idx = H5Literate(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
        cout << endl;

        /*
         * Close the group and file.
         */
        delete group;
        delete file;
    }  // end of try block

    // catch failure caused by the H5File operations
    catch( FileIException error )
    {
        error.printError();
        return -1;
    }

    // catch failure caused by the DataSet operations
    catch( DataSetIException error )
    {
        error.printError();
        return -1;
    }

    // catch failure caused by the DataSpace operations
    catch( DataSpaceIException error )
    {
        error.printError();
        return -1;
    }

    // catch failure caused by the Attribute operations
    catch( AttributeIException error )
    {
        error.printError();
        return -1;
    }
    return 0;
}

/*
 * Operator function.
 */
herr_t
file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata)
{
    hid_t group;

    /*
     * Open the group using its name.
     */
    group = H5Gopen2(loc_id, name, H5P_DEFAULT);

    /*
     * Display group name.
     */
    cout << "Name : " << name << endl;

    H5Gclose(group);
    return 0;
}

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