AMRIO.H File Reference

#include "REAL.H"
#include "LevelData.H"
#include "Vector.H"
#include "FArrayBox.H"
#include "CFArrayBox.H"
#include "FluxBox.H"
#include "IntVectSet.H"
#include "IVSFAB.H"
#include "RealVect.H"
#include <string>
#include "NamespaceHeader.H"
#include "NamespaceFooter.H"

Include dependency graph for AMRIO.H:

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Go to the source code of this file.

Functions

void WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels)

void WriteAnisotropicAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const RealVect &a_dx, const Real &a_dt, const Real &a_time, const Vector< IntVect > &a_vectRatios, const int &a_numLevels)

void WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels)

void WriteAnisotropicAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const RealVect &a_dx, const Real &a_dt, const Real &a_time, const Vector< IntVect > &a_vectRatios, const int &a_numLevels)

void WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels)

void WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels)

int ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels)

int ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels)

int ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels)

int ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels)

int ReadAnisotropicAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, RealVect &a_dx, Real &a_dt, Real &a_time, Vector< IntVect > &a_refRatio, int &a_numLevels)

int ReadAnisotropicAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, RealVect &a_dx, Real &a_dt, Real &a_time, Vector< IntVect > &a_refRatio, int &a_numLevels)

int ReadAnisotropicAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Box &a_domain, Vector< IntVect > &a_refRatio, int &a_numLevels)

int ReadAnisotropicAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Box &a_domain, Vector< IntVect > &a_refRatio, int &a_numLevels)

void viewIVS (const IntVectSet *a_dataPtr)

void viewVectorBox (const Vector< Box > *a_dataPtr)

void writeFAB (const FArrayBox *a_dataPtr)

void viewFAB (const FArrayBox *a_dataPtr)

void viewBFI (const BaseFab< int > *a_dataPtr)

void viewBFIV (const BaseFab< IntVect > *a_dataPtr)

void viewBFRV (const BaseFab< RealVect > *a_dataPtr)

void viewIVSFAB (const IVSFAB< Real > *a_dataPtr)

void viewIVSFABI (const IVSFAB< int > *a_dataPtr)

void viewIVSFABIV (const IVSFAB< IntVect > *a_dataPtr)

void viewIVSFABRV (const IVSFAB< RealVect > *a_dataPtr)

void viewCFAB (const CFArrayBox *a_dataPtr)

void browseFAB (const FArrayBox *a_dataPtr)

void writeBFR (const BaseFab< Real > *a_dataPtr)

void viewBFR (const BaseFab< Real > *a_dataPtr)

void writeFABname (const FArrayBox *a_dataPtr, const char *a_filename, const Vector< string > &a_compNames=Vector< string >(), const Real &a_dx=1.0)

void writeCFABname (const CFArrayBox *a_dataPtr, const char *a_filename)

void viewLevelNoFine (const LevelData< FArrayBox > *a_dataPtr, const LevelData< FArrayBox > *a_dataFinePtr, int a_refRatio)

void writeLevel (const LevelData< FArrayBox > *a_dataPtr)

void viewLevel (const LevelData< FArrayBox > *a_dataPtr)

void viewFluxLevel (const LevelData< FluxBox > *a_dataPtr)

void browseLevel (const LevelData< FArrayBox > *a_dataPtr)

void viewLevelNoGhost (const LevelData< FArrayBox > *a_dataPtr)

void viewVectorLevel (const Vector< LevelData< FArrayBox > * > *a_dataPtr, const Vector< int > *a_refRatios)

void writeLevelname (const LevelData< FArrayBox > *a_dataPtr, const char *a_filename)

void writeVectorLevelName (const Vector< LevelData< FArrayBox > * > *a_dataPtr, const Vector< int > *a_refRatios, const char *a_filename)

void writeDBL (const DisjointBoxLayout *a_dataPtr)

void viewDBL (const DisjointBoxLayout *a_dataPtr)

void viewLevelBFI (const LevelData< BaseFab< int > > *a_dataPtr)

void writeCopier (const Copier *a_copier)

void viewCopier (const Copier *a_copier)

void writeDBLname (const DisjointBoxLayout *a_dataPtr, const char *a_filename)

void WritePartialAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_baseDomain, const Real &a_baseDx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const Interval &a_levels)

Function Documentation

void WriteAMRHierarchyHDF5	(	const string &	filename,
		const Vector< DisjointBoxLayout > &	a_vectGrids,
		const Vector< LevelData< FArrayBox > * > &	a_vectData,
		const Vector< string > &	a_vectNames,
		const Box &	a_domain,
		const Real &	a_dx,
		const Real &	a_dt,
		const Real &	a_time,
		const Vector< int > &	a_vectRatio,
		const int &	a_numLevels
	)

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.

{ Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is blocking.

void WriteAnisotropicAMRHierarchyHDF5	(	const string &	filename,
		const Vector< DisjointBoxLayout > &	a_vectGrids,
		const Vector< LevelData< FArrayBox > * > &	a_vectData,
		const Vector< string > &	a_vectNames,
		const Box &	a_domain,
		const RealVect &	a_dx,
		const Real &	a_dt,
		const Real &	a_time,
		const Vector< IntVect > &	a_vectRatios,
		const int &	a_numLevels
	)

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.

{ Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing in each direction at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio in each direction at all levels (ith entry is refinement ratio in each direction between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is blocking.

void WriteAMRHierarchyHDF5	(	HDF5Handle &	handle,
		const Vector< DisjointBoxLayout > &	a_vectGrids,
		const Vector< LevelData< FArrayBox > * > &	a_vectData,
		const Vector< string > &	a_vectNames,
		const Box &	a_domain,
		const Real &	a_dx,
		const Real &	a_dt,
		const Real &	a_time,
		const Vector< int > &	a_vectRatio,
		const int &	a_numLevels
	)

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.

{ Arguments:}\ handle : handle to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is not blocking.

void WriteAnisotropicAMRHierarchyHDF5	(	HDF5Handle &	handle,
		const Vector< DisjointBoxLayout > &	a_vectGrids,
		const Vector< LevelData< FArrayBox > * > &	a_vectData,
		const Vector< string > &	a_vectNames,
		const Box &	a_domain,
		const RealVect &	a_dx,
		const Real &	a_dt,
		const Real &	a_time,
		const Vector< IntVect > &	a_vectRatios,
		const int &	a_numLevels
	)

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.

{ Arguments:}\ handle : handle to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing in each direction at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio in each direction at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is not blocking.

void WriteAMRHierarchyHDF5	(	const string &	filename,
		const Vector< DisjointBoxLayout > &	a_vectGrids,
		const Vector< LevelData< FArrayBox > * > &	a_vectData,
		const Box &	a_domain,
		const Vector< int > &	a_vectRatio,
		const int &	a_numLevels
	)

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.

{ Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is blocking.

void WriteAMRHierarchyHDF5	(	HDF5Handle &	handle,
		const Vector< DisjointBoxLayout > &	a_vectGrids,
		const Vector< LevelData< FArrayBox > * > &	a_vectData,
		const Box &	a_domain,
		const Vector< int > &	a_vectRatio,
		const int &	a_numLevels
	)

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.

{ Arguments:}\ handle : handle to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is not blocking.

int ReadAMRHierarchyHDF5	(	const string &	filename,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Vector< string > &	a_vectNames,
		Box &	a_domain,
		Real &	a_dx,
		Real &	a_dt,
		Real &	a_time,
		Vector< int > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is blocking

int ReadAMRHierarchyHDF5	(	HDF5Handle &	handle,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Vector< string > &	a_vectNames,
		Box &	a_domain,
		Real &	a_dx,
		Real &	a_dt,
		Real &	a_time,
		Vector< int > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ handle : handle to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is not blocking

int ReadAMRHierarchyHDF5	(	const string &	filename,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Box &	a_domain,
		Vector< int > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is blocking.

int ReadAMRHierarchyHDF5	(	HDF5Handle &	handle,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Box &	a_domain,
		Vector< int > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ handle : handle to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is not blocking.

int ReadAnisotropicAMRHierarchyHDF5	(	const string &	filename,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Vector< string > &	a_vectNames,
		Box &	a_domain,
		RealVect &	a_dx,
		Real &	a_dt,
		Real &	a_time,
		Vector< IntVect > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in ANISOTROPIC HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is blocking

int ReadAnisotropicAMRHierarchyHDF5	(	HDF5Handle &	handle,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Vector< string > &	a_vectNames,
		Box &	a_domain,
		RealVect &	a_dx,
		Real &	a_dt,
		Real &	a_time,
		Vector< IntVect > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in ANISOTROPIC HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ handle : handle to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is not blocking

int ReadAnisotropicAMRHierarchyHDF5	(	const string &	filename,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Box &	a_domain,
		Vector< IntVect > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in ANISOTROPIC HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is blocking.

int ReadAnisotropicAMRHierarchyHDF5	(	HDF5Handle &	handle,
		Vector< DisjointBoxLayout > &	a_vectGrids,
		Vector< LevelData< FArrayBox > * > &	a_vectData,
		Box &	a_domain,
		Vector< IntVect > &	a_refRatio,
		int &	a_numLevels
	)

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.

{ Arguments:}\ handle : handle to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\

{ Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is not blocking.

void viewIVS ( const IntVectSet * a_dataPtr )

View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running VisIt with a python script which brings up a data browser by default. The file created uses the Boxes that underlie the IntVectSet. If a_domain is 0, then the domain used in the file is the minBox of a_dataPtr.

Referenced by InitWriteFAB().

void viewVectorBox ( const Vector< Box > * a_dataPtr )

View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running VisIt with a python script which brings up a data browser by default. If a_domain is 0, then the domain used in the file is the minBox of a_dataPtr.

Referenced by InitWriteFAB().

void writeFAB ( const FArrayBox * a_dataPtr )

Writes a plotfile using the same format as WriteAMRHierarchyHDF5, but for a FArrayBox. This is useful for debugging. *a_dataPtr is written to a file named fab.hdf5

Referenced by InitWriteFAB().

void viewFAB ( const FArrayBox * a_dataPtr )

View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running VisIt with a python script which brings up a data browser by default. The file has the same format as WriteAMRHierarchyHDF5, but for a single FArrayBox. This is useful for debugging.

Referenced by InitWriteFAB().

void viewBFI ( const BaseFab< int > * a_dataPtr )