BoxLayout.H

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#ifdef CH_LANG_CC
/*
 *      _______              __
 *     / ___/ /  ___  __ _  / /  ___
 *    / /__/ _ \/ _ \/  V \/ _ \/ _ \
 *    \___/_//_/\___/_/_/_/_.__/\___/
 *    Please refer to Copyright.txt, in Chombo's root directory.
 */
#endif

#ifndef _BOXLAYOUT_H_
#define _BOXLAYOUT_H_

#include "Box.H"
#include "Vector.H"
#include "RefCountedPtr.H"
#include "DataIndex.H"
#include "SPMD.H"
#include "LoHiSide.H"
#include "ProblemDomain.H"
#include "NamespaceHeader.H"

class DataIterator;
class TimedDataIterator;
class LayoutIterator;
template<class T> class LayoutData;

///Base class to transform boxes in an existing layout
/**
   If you want to do something esoteric to each box in a layout and preserve
   its ordering and proc assignment, here is what you do.
   Define your own transformation that inherits from this  and here is
   what the code will look like.

   class MyTransform: public BaseTransform
   {
     virtual Box operator()(const Box& a_inputBox)
         {
          ///do what you need to output the box you want given the input
         }
   };

   BoxLayout bl1; //fill this one with starting layout
   BoxLayout bl2 = bl1;
   MyTransform mytrans;
   bl2.transform(mytrans);
 */
class BaseTransform
{
public:
  ///
  virtual Box operator()(const Box& a_inputBox) = 0;

  ///apparently I have to declare this to make some compilers happy.
  virtual ~BaseTransform()
  {
    ;
  }
};

struct Entry
{
  Entry()
    :
    m_procID(procID())
  {}

  Entry(const Box& a_box)
    :
    box(a_box),
    m_procID(procID())
  {}

  Entry(const Box& a_box, const unsigned int a_index)
    :
    box(a_box),
    m_procID(procID())
  {}

  bool operator < (const Entry& rhs) const
  {
    return box < rhs.box;
  }

  Box box;
  unsigned int m_procID;// not used in serial code.
};

///A not-necessarily-disjoint collective of boxes.
/**
  A BoxLayout is a collection of Box objects that are assigned
  to process numbers.  Each box is associated with only one
  process.  Processes are numbered from 0 to n-1 (for a job with
  n processes).

  A BoxLayout can be either open or closed.

  Open BoxLayout:
  - Created by null construction or deepCopy.
  - Boxes may be added to it.
  - Non-const operations may be performed on the boxes in it.

  Closed BoxLayout:
  - Created by constructor with vectors of Boxes and processors given explicitly.
  - Cannot be modified.
  - Represented as sorted boxes.
  - Many uses of BoxLayouts require a closed BoxLayout.

  <b>Ref-counting</b>

  BoxLayout is an explicitly ref-counted object.

  Assignment and copy are compiler-generated.  They increment the refcount
  on the contained data members.  They perform shallow, ref-counted
  operations.

  Refcounting is a process whereby multiple instantiations make
  use of a single implementation of that object and keep a tally
  of how many instantiations are sharing.  Thus:
  <PRE>

  BoxLayout b1(boxes, procIDs);

            b1  ----> refcount = 1
                ---->  m_boxes
                ---->  m_processors

  BoxLayout b2(b1)

            b1  ----> refcount = 2  <---- b2
                ---->  m_boxes      <----
                ---->  m_processors <----

  BoxLayout b3;
  b3 = b2;

            b1  ----> refcount = 3  <---- b2
                ---->  m_boxes      <----
                ---->  m_processors <----
                        ^^^
                        |||
                         b3
  </PRE>
*/
class BoxLayout
{
public:

  /**
     \name Constructors, destructors, assignments, defines
  */
  /*@{*/

  ///
  /**
     Construct BoxLayout with no boxes.
   */
  BoxLayout();

  ///
  /** Construct from a Vector of Boxes and a Vector of
      processor assignments.  On exit, the BoxLayout will be closed.
  */
  BoxLayout(const Vector<Box>& a_boxes,
            const Vector<int>& a_procIDs);

  ///
  /** Construct from a LayoutData<Box>.
      On exit, the BoxLayout will be closed.
  */
  BoxLayout(const LayoutData<Box>& a_newLayout);

  ///
  void transform(BaseTransform& a_transform);

  ///
  /**
    Ref-counted destruction.  Once the last reference to the
    implementation of this class is destroyed, the data members
    are cleaned up
  */
  virtual
  ~BoxLayout();

  ///
  /**
     Ref-counted assignment.
   */
  BoxLayout& operator=(const BoxLayout& a_rhs);

  ///
  /** Define this BoxLayout from a Vector of Boxes and a
      Vector of processor assignments.  Any pre-existing layout will
      be lost (ref-count dropped by one).  The processor assignment Vector
      must be the same length
      as the Box Vector.  On exit, the BoxLayout will be closed.
  */
  virtual void
  define(const Vector<Box>& a_boxes,
         const Vector<int>& a_procIDs);

  ///
  /** Define this BoxLayout from a LayoutData<Box>.
      We can iterate through the new BoxLayout by the same iterator as
      through the underlying BoxLayout of the LayoutData<Box>.
      Each Box in the new BoxLayout is in the same position as
      each Box in the LayoutData<Box>.
      On exit, the BoxLayout will be closed, and NOT re-sorted.
  */
  virtual void define(const LayoutData<Box>& a_newLayout);

  /*@}*/

  /**
     \name Accessors
  */
  /*@{*/

  ///
  /** const accessor operator.  See also get(const LayoutIndex&).
   */
  Box
  operator[](const LayoutIndex& it) const;

  ///
  /** accessor operator.  See also get(const LayoutIndex&).
   */
  Box
  operator[](const LayoutIterator& it) const;

  ///
  /** accessor operator.  See also get(const LayoutIndex&).
   */
  Box
  operator[](const DataIterator& it) const;

  ///
  /** Get box indexed by <i>it</i>.

      As a consequence of the C++ compiler being free to choose which
      version of operator[] when the object is technically non-const, we very
      often get 'BoxLayout closed' errors.
      This is a non-overloaded get method.
  */
  Box get(const LayoutIndex& it) const;

  ///
  /** Get box indexed by <i>it</i>. equivalent to  get(it()), just does the extra() for you.
   */
  Box get(const DataIterator& it) const;

  ///
  /** Get box indexed by <i>it</i>. equivalent to  get(it()), just does the extra() for you.
   */
  Box get(const LayoutIterator& it) const;

  ///
  /** Returns the processor to which this box has been assigned.
      Not a user function, at least, not a new user function.  It can
      be used safely at anytime, closed or open.  A person needing this
      level of knowledge of the processor assignment should have non-trivial
      needs, like writing your own load balancer or such.
      Most user-level parallel

  */
  unsigned int
  procID(const LayoutIndex& a_index) const ;

  /// Checks whether this layout has the same boxes in the same order as a_layout.
  /** Checks whether this layout has the same boxes in the same order as a_layout.
   */
  bool sameBoxes(const BoxLayout& a_layout) const;

  /// Returns the number of boxes assigned to a given procID.
  /** Returns the number of boxes assigned to a given procID.
   */
  int numBoxes(const int procID) const;

  /// Return number of cells in all boxes of entire box layout
  long long numCells() const;

  /// Returns the total number of boxes in the BoxLayout.
  /** Returns the total number of boxes in the BoxLayout.
   */
  unsigned int
  size() const ;

  /** Not a user function.  Used in I/O routine.
   */
  unsigned int index(const LayoutIndex& index) const;

  unsigned int lindex(const DataIndex& index) const;
  /*@}*/

  /**
     \name Checks
  */
  /*@{*/

  ///
  /** Refcounted pointer check.  Return <tt>true</tt> if these two objects
      share the same implementation.
  */
  inline bool ptrEqual(const BoxLayout& rhs) const;

  /// check to see if BoxLayouts are equivalent
  inline bool
  operator==(const BoxLayout& rhs) const ;

  /**
     RefCounted pointer compare.  Need this to use DisjointBoxLayout as a Key in a std::map
  */
  inline bool operator<(const BoxLayout& rhs) const ;

  /**
      current ref count for this object
  */
  int refCount() const
  {
    return m_boxes.refCount();
  }
  ///
  /** Refcounted pointer check.  Return <tt>true</tt> if these two objects
      share the same implementation.
    */
  bool eq(const BoxLayout& rhs) const
  {
    return *this == rhs;
  }

  /** Return <tt>true</tt> if close() has been called.
      Closed BoxLayout is always sorted.
   */
  bool
  isClosed() const;

  ///
  /** Return <tt>true</tt> if sort() has been called.
   */
  bool
  isSorted() const
  {
    return *m_sorted;
  }

  /** not a user function
   */
  bool check(const LayoutIndex& index) const
    { return index.m_layoutIntPtr == m_layout;}

  ///
  /**
     returns 'true' if you can use the same LayoutIterator and DataIterator on these
     two layouts and data holders built on top of these layouts
  */
  bool compatible(const BoxLayout& a_rhs) const
  {
    return m_layout == a_rhs.m_layout;
  }

  /*@}*/

  /**
     \name Modification functions
  */
  /*@{*/

  ///
  /** Mark this BoxLayout as complete and unchangeable.
   */
  virtual void
  close();

  // not for general consumption.
  virtual void
  closeNoSort();

  ///
  /** Actual deep copy operation.  New object created with copied
      data.  This object disassociates itself with original implementation
      safely.  This object now is considered 'open' and can be non-const
      modified.  There is no assurance that the order in which this BoxLayout
      is indexed corresponds to the indexing of <i>a_source</i>.
<PRE>
       BoxLayout b1(boxes, procIDs);

            b1  ----> refcount = 1
                ---->  m_boxes
                ---->  m_processors

       BoxLayout b2(b1)

            b1  ----> refcount = 2  <---- b2
                ---->  m_boxes      <----
                ---->  m_processors <----

       BoxLayout b3;
       b3.deepCopy(b2);
            b1  ----> refcount = 2  <---- b2  b3 ----> refcount = 1
                ---->  m_boxes      <----        ---->  m_boxes
                ---->  m_processors <----        ---->  m_processors
</PRE>
  */
  virtual void
  deepCopy(const BoxLayout& a_source);

  ///
  /**
     returns true iff:
     - every Box in the BoxLayout can be coarsened by refRatio and return back
     to the original Box when refined by refRatio.
     - refRatio must be a positive non-zero integer.
  */
  bool coarsenable(int refRatio) const;


  ///
  /**
     returns true iff:
     - every Box in the BoxLayout can be coarsened by refRatio and return back
     to the original Box when refined by refRatio.
     - refRatio must be an IntVect with positive non-zero integer components.
  */
  bool coarsenable(IntVect refRatio) const;  

  ///
  /**
     Coarsen a BoxLayout:
     - <i>output</i> must be open
     - <i>input</i> must be closed
     - <i>refinement</i> must be a positive non-zero integer
     - <i>output</i> and <i>input</i> do not share an
     implementation.

     <i>output</i> is first deepCopy'ed from <i>input</i>,
     then coarsen(refinement) is called on each box of <i>output</i>.

     <i>output</i> returns from this function closed.

     LayoutIterators and DataIterators from <i>input</i> and <i>output</i>
     can be used interchangeably.
  */
  friend void coarsen(BoxLayout& output,
                      const BoxLayout& input,
                      int refinement);

  ///same idea but with anisotropic refinement
  friend void coarsen(BoxLayout& output,
                      const BoxLayout& input,
                      const IntVect&   refinement);

  ///
  /**
     if a_sd == side::lo, do growLo, else do grow hi with the other arguments.
   */
  void growSide(int idir, int length, Side::LoHiSide a_sd);

  ///
  /**
     Do surroundingNodes on each box.
   */
  void surroundingNodes();

  ///
  /**
     multiblock stuff.
   */
  void convertOldToNew(const IntVect& a_permutation,
                       const IntVect& a_sign,
                       const IntVect& a_translation);

  ///
  /**
     multiblock stuff.
   */
  void convertNewToOld(const IntVect& a_permutation,
                       const IntVect& a_sign,
                       const IntVect& a_translation);

  ///
  /**
     Do enclosedCells on each box.
   */
  void enclosedCells();

  ///
  /**
     coarsen each box by a_ref
   */
  void coarsen(int a_ref);

  ///
  /**
     refine each box by a_ref
   */
  void refine(int a_ref);

  ///
  /**
     grow each box by a_growth
   */
  void grow(int a_growth);

  ///
  /**
     grow each box by a_growth
   */
  void grow(IntVect a_growth);

  ///
  /**
     grow each box in a_dir by a_growth
   */
  void grow(int a_dir, int a_growth);

  ///
  /**
     shift each box by a_iv
   */
  void shift(const IntVect& a_iv);

  ///
  /**
     shift each box by a_iv
   */
  void shiftHalf(const IntVect& a_iv);

  ///
  /**
     set each box to the appropriate adjCellSide call
     if a_sd == side::lo, do adjCellLo, else do adjCellhi with the other arguments.
   */
  void adjCellSide(int a_dir, int a_len, Side::LoHiSide a_sd);

  ///
  /**
     intersect all boxes with incoming box
   */
  void operator&= (const Box& a_box);

  ///
  /**
     intersect all boxes with incoming box
   */
  void operator&= (const ProblemDomain& a_domain);

  ///
  /**
     Refine a BoxLayout:
     - <i>output</i> must be open
     - <i>input</i> must be closed
     - <i>refinement</i> must be a positive non-zero integer
     - <i>output</i> and <i>input</i> do not share an
     implementation.

     <i>output</i> is first deepCopy'ed from <i>input</i>,
     then refine(refinement) is called on each box of <i>output</i>.

     <i>output</i> returns from this function closed.

     LayoutIterators and DataIterators from <i>input</i> and <i>output</i>
     can be used interchangeably.
  */
  friend void refine(BoxLayout& output,
                     const BoxLayout& input,
                     int refinement);

  /// same idea but now with anisotropic refinement.   now how much would you pay?
  friend void refine(BoxLayout& output,
                     const BoxLayout& input,
                     const IntVect& refinement);

  ///
  /** Assign a Box in the BoxLayout to a processor.
      Requires the BoxLayout to be open.
  */
  void
  setProcID(const LayoutIndex& a_index, unsigned int a_procID);

  //const or non-const operation ?.....I can think of usages either way...bvs
  ///
  /**
     Sort the boxes of an open BoxLayout.
     No change if the BoxLayout is closed.
  */
  void
  sort();

  /*@}*/

  /**
     \name Iterators
  */
  /*@{*/

  ///Parallel iterator.
  /** Parallel iterator.

      Returns DataIndex object that corresponds to boxes
      on the local processor only. */
  DataIterator
  dataIterator() const;

  ///
  TimedDataIterator
  timedDataIterator() const;

  ///Iterator that processes through ALL the boxes in a BoxLayout.
  /** Iterator that processes through ALL the boxes in a BoxLayout.

      If BoxLayout is closed, then LayoutIterator will return
      the Boxes in sorted order. */
  LayoutIterator
  layoutIterator() const;

  /*@}*/

  /**
     \name I/O functions
  */
  /*@{*/

  ///
  /**
     Invokes cout<<*this; pretty-print dump of BoxLayout.
   */
  void
  print() const;

  ///
  /**
     Invokes cout<<*this; pretty-print dump of BoxLayout.
   */
  void p() const
  {
    print();
  }

  /*@}*/

  /* Return all the constituent boxes. */
  Vector<Box> boxArray() const;

  /** Return the processor id numbers corresponding to the boxes as returned by
   *  this->boxArray().
  */
  Vector<int> procIDs() const;

  inline unsigned int indexI(const LayoutIndex&) const;

  const Vector<Entry>* rawPtr() const
  {
    return m_boxes;
  }
protected:

  void buildDataIndex();
  friend class LayoutIterator;
  friend class DataIterator;

  RefCountedPtr<Vector<Entry> >        m_boxes;
  RefCountedPtr<int>                   m_layout;
  RefCountedPtr<bool>                  m_closed;
  RefCountedPtr<bool>                  m_sorted;
  RefCountedPtr<DataIterator>          m_dataIterator;
  RefCountedPtr<Vector<LayoutIndex> >  m_indicies;

#ifdef CH_MPI
  RefCountedPtr<Vector<DataIndex> >    m_dataIndex;
#endif

  void checkDefine(const Vector<Box>& a_boxes, const Vector<int>& procIDs);
private:

};

void coarsen_bl(BoxLayout& output, const BoxLayout& input, int refinement);

void refine_bl(BoxLayout& output, const BoxLayout& input, int refinement);

inline
void coarsen_bl(BoxLayout& output, const BoxLayout& input, int refinement)
{
  coarsen(output, input, refinement);
}

inline
void refine_bl(BoxLayout& output, const BoxLayout& input, int refinement)
{
  refine(output, input, refinement);
}

void mortonOrdering(Vector<Box>& a_boxes);
void serialMortonOrdering(Vector<Box>& a_boxes);

//========================================================

inline Box
BoxLayout::operator[](const LayoutIndex& a_layoutIndex) const
{
  CH_assert(check(a_layoutIndex));// make sure this LayoutIndex came from my own iterator
  return m_boxes->operator[](a_layoutIndex.m_index).box;
}


///
/** Refcounted pointer check.  Return <tt>true</tt> if these two objects
    share the same implementation.
*/
inline bool
BoxLayout::ptrEqual(const BoxLayout& rhs) const
{
  return((m_layout==rhs.m_layout) && (m_boxes==rhs.m_boxes));
}

inline bool
BoxLayout::operator==(const BoxLayout& rhs) const
{
  bool firstcomp = (m_layout == rhs.m_layout);
  bool secondcomp = true;
  if((m_boxes->size() >0) && (rhs.m_boxes->size() > 0))  
    {
      secondcomp = (m_boxes->operator[](0).box == rhs.m_boxes->operator[](0).box);
    }

  return (firstcomp && secondcomp);
}

inline bool
BoxLayout::operator<(const BoxLayout& rhs) const
{
  if(*this == rhs) return false;
  if(m_layout == rhs.m_layout) return  m_boxes->operator[](0).box.numPts() < rhs.m_boxes->operator[](0).box.numPts();
  return m_layout < rhs.m_layout;
}

// member functions
// ================

inline  Box
BoxLayout::get(const LayoutIndex& a_layoutIndex) const
{
  CH_assert(check(a_layoutIndex)); // make sure this LayoutIndex came from my own iterator
  return m_boxes->operator[](a_layoutIndex.m_index).box;
}

inline unsigned int
BoxLayout::index(const LayoutIndex& a_layoutIndex) const
{
  return a_layoutIndex.m_index;
}

inline bool
BoxLayout::isClosed() const
{
  return *m_closed;
}

inline unsigned int
BoxLayout::procID(const LayoutIndex& a_layoutIndex) const
{
  CH_assert(check(a_layoutIndex));
  return m_boxes->operator[](a_layoutIndex.m_index).m_procID;
}

inline void
BoxLayout::setProcID(const LayoutIndex& a_layoutIndex, unsigned int a_procID)
{
  CH_assert(check(a_layoutIndex));
  m_boxes->operator[](a_layoutIndex.m_index).m_procID = a_procID;
}

// global functions
// ================

std::ostream& operator<<(std::ostream& os, const BoxLayout& a_layout);

#include "NamespaceFooter.H"

#endif