EBInterface.H File Reference

#include <hdf5.h>
#include <math.h>
#include "NamespaceHeader.H"
#include "NamespaceFooter.H"

Include dependency graph for EBInterface.H:

Go to the source code of this file.

Classes
struct	intvect2d
struct	intvect3d
struct	box2d
struct	box3d
union	box
struct	regvof
struct	irregface
struct	irregvof
struct	Attribute
struct	HDF5attributes

Macros
#define	_EBINTERFACE_H_
#define	ChTYPES   8
#define	ADD_ATTRIBUTE(attrib, Ttype, ChType, Sname, value)
#define	ADD_CHAR_ATTRIBUTE(attrib, Sname, value)
#define	CFINITE(X)   !isnan(X) && (X) < HUGE_VAL && (X) > -HUGE_VAL

Enumerations
enum	ChPrecision { Float, Double }
enum	ChattributeType {   INTEGER, FLOAT, DOUBLE, CHAR,   INTVECT2D, INTVECT3D, BOX2D, BOX3D }

Functions
void	initializeHDF5datatypes ()
int	writeEBChomboFile (const char *filename, box3d domain, int length, box3d *boxes, long *regoffset, long *irregoffset, long numreg, long numirreg, regvof *regularVofs, irregvof *irregularVofs)
int	isEmpty (const box2d *)
int	numPnts2 (const box2d *)
int	numPnts3 (const box3d *)
void	grow2 (box2d *, intvect2d *)
void	grow3 (box3d *, intvect3d *)
void	refine2 (box2d *, int refinement)
void	refine3 (box3d *, int refinement)
int	cut (const box3d *box, int dir, int index)
box2d *	crossSection (const box3d *box, int dir, box2d *box2)
int	Handleopen (HDF5Handle *handle, const char *filename, hid_t accessMode)
int	HandlesetGroup (HDF5Handle *handle, const char *group)
int	Handleclose (HDF5Handle handle)
int	HandleCreateGroup (HDF5Handle *handle, const char *group)
void	freeHDF5attributes (HDF5attributes *attributes)
void	printAttributes (HDF5attributes *attributes)
int	readHDF5attributes (HDF5attributes *attr, HDF5Handle handle)
int	readBoxes (box **boxes, int *length, HDF5Handle handle)
int	writeHDF5attributes (HDF5attributes *attr, HDF5Handle handle)
int	writeBoxes (box *boxes, int length, HDF5Handle handle)

Variables
static hid_t	intvect2d_id
static hid_t	intvect3d_id
static hid_t	box2d_id
static hid_t	box3d_id
struct {
hid_t   file_ID
hid_t   group_ID
int   dim
ChPrecision   precision
}	HDF5Handle
static const char *	TYPE_NAMES [ChTYPES]
Attribute *	ADD_tmp
Attribute *	ADD_at

Macro Definition Documentation

_EBINTERFACE_H_

#define _EBINTERFACE_H_

ChTYPES

#define ChTYPES   8

ADD_ATTRIBUTE

#define ADD_ATTRIBUTE	(		attrib,
			Ttype,
			ChType,
			Sname,
			value
	)

Value:

ADD_tmp = attrib.accessByType[ChType] ;                            \
ADD_at = (Attribute*) malloc(sizeof(Attribute));                   \
attrib.accessByType[ChType] = ADD_at;                              \
ADD_at->name = malloc(strlen(Sname)+1);                              \
sprintf(ADD_at->name, Sname);                                      \
ADD_at->data = malloc(sizeof(Ttype));                              \
ADD_at->attributeType = ChType;                                    \
*((Ttype *)ADD_at->data) = value;                                  \
  ADD_at->next = ADD_tmp;                                          \
attrib.numByType[ChType]++;                                        \

ADD_CHAR_ATTRIBUTE

#define ADD_CHAR_ATTRIBUTE	(		attrib,
			Sname,
			value
	)

Value:

ADD_tmp = attrib.accessByType[CHAR] ;                              \
ADD_at = (Attribute*) malloc(sizeof(Attribute));                   \
attrib.accessByType[CHAR] = ADD_at;                                \
ADD_at->name = malloc(strlen(Sname));                              \
sprintf(ADD_at->name, Sname);                                      \
ADD_at->data = malloc(strlen(value));                              \
ADD_at->attributeType = CHAR;                                      \
sprintf((char*)ADD_at->data, value);                               \
  ADD_at->next = ADD_tmp;                                          \
attrib.numByType[CHAR]++;                                          \

CFINITE

#define CFINITE

(

X

)

!isnan(X) && (X) < HUGE_VAL && (X) > -HUGE_VAL

create our own platform independent form that spans a lot of IEEE goofiness.

Enumeration Type Documentation

ChPrecision

enum ChPrecision

Enumerator
Float
Double

ChattributeType

enum ChattributeType

Enumerator
INTEGER
FLOAT
DOUBLE
CHAR
INTVECT2D
INTVECT3D
BOX2D
BOX3D

Function Documentation

initializeHDF5datatypes()

void initializeHDF5datatypes

(

)

writeEBChomboFile()

int writeEBChomboFile	(	const char *	filename,
		box3d	domain,
		int	length,
		box3d *	boxes,
		long *	regoffset,
		long *	irregoffset,
		long	numreg,
		long	numirreg,
		regvof *	regularVofs,
		irregvof *	irregularVofs
	)

isEmpty()

int isEmpty

(

const box2d *

)

Referenced by Box::contains(), Box::convert(), Box::copy(), Box::enclosedCells(), Box::grow(), Box::growHi(), Box::growLo(), ProblemDomain::isPeriodicVect(), Box::operator+(), Box::operator+=(), Box::operator-(), Box::operator-=(), Box::operator<(), Box::shift(), Box::surroundingNodes(), and StdSetIVS::~StdSetIVS().

numPnts2()

int numPnts2

(

const box2d *

)

numPnts3()

int numPnts3

(

const box3d *

)

grow2()

void grow2	(	box2d *	,
		intvect2d *
	)

grow3()

void grow3	(	box3d *	,
		intvect3d *
	)

refine2()

void refine2	(	box2d *	,
		int	refinement
	)

refine3()

void refine3	(	box3d *	,
		int	refinement
	)

cut()

int cut	(	const box3d *	box,
		int	dir,
		int	index
	)

crossSection()

box2d* crossSection	(	const box3d *	box,
		int	dir,
		box2d *	box2
	)

Handleopen()

int Handleopen	(	HDF5Handle *	handle,
		const char *	filename,
		hid_t	accessMode
	)

HandlesetGroup()

int HandlesetGroup	(	HDF5Handle *	handle,
		const char *	group
	)

Handleclose()

int Handleclose

(

HDF5Handle

handle

)

HandleCreateGroup()

int HandleCreateGroup	(	HDF5Handle *	handle,
		const char *	group
	)

freeHDF5attributes()

void freeHDF5attributes

(

HDF5attributes *

attributes

)

printAttributes()

void printAttributes

(

HDF5attributes *

attributes

)

readHDF5attributes()

int readHDF5attributes	(	HDF5attributes *	attr,
		HDF5Handle	handle
	)

readBoxes()

int readBoxes	(	box **	boxes,
		int *	length,
		HDF5Handle	handle
	)

writeHDF5attributes()

int writeHDF5attributes	(	HDF5attributes *	attr,
		HDF5Handle	handle
	)

writeBoxes()

int writeBoxes	(	box *	boxes,
		int	length,
		HDF5Handle	handle
	)

Variable Documentation

intvect2d_id

hid_t intvect2d_id

static

intvect3d_id

hid_t intvect3d_id

static

box2d_id

hid_t box2d_id

static

box3d_id

hid_t box3d_id

static

file_ID

hid_t file_ID

group_ID

hid_t group_ID

dim

int dim

Referenced by CutCellMoments< dim >::addBdMoments(), NormalDerivativeNew< dim >::addLDeriv(), ComputeCutCellMoments< dim >::addMomentMaps(), NormalDerivativeNew< dim >::addNDeriv(), DivNormalRefinement< dim >::approximateDivNormal(), NormalDerivativeNew< dim >::calculateAll(), NormalDerivativeNew< dim >::calculatePhiDerivs(), CutCellMoments< dim >::changeMomentCoordinates(), LSProblem< dim >::computeBounds(), ComputeCutCellMoments< dim >::ComputeCutCellMoments(), ComputeCutCellMoments< dim >::computeMoments(), MinimalCCCM< dim >::computeMomentsRecursively(), ComputeCutCellMoments< dim >::computeResiduals(), MinimalCCCM< dim >::computeRhs(), ComputeCutCellMoments< dim >::computeRhs(), CoordinateSystem< 1 >::convert(), CoordinateSystem< 1 >::CoordinateSystem(), CutCellMoments< dim >::CutCellMoments(), IFData< dim >::defineLocalCoords(), LSProblem< dim >::differentiate(), NoRefinement< dim >::doRefine(), FixedRefinement< dim >::doRefine(), ParticleData< P >::enforcePeriodic(), NormalDerivative< dim >::evaluate(), NormalDerivative< dim >::expand(), MinimalCCCM< dim >::factorial(), ComputeCutCellMoments< dim >::factorial(), CutCellMoments< dim >::fullCellQuadrature(), generateMultiIndices(), CutCellMoments< dim >::getCentroid(), IFData< dim >::IFData(), CutCellMoments< dim >::initialize(), LSProblem< dim >::invertNormalEq(), IFData< dim >::isConnected(), LSProblem< dim >::LSProblem(), IFData< dim >::makeCornerSigns(), IFData< dim >::makeEdgeKey(), MinimalCCCM< dim >::MinimalCCCM(), LSProblem< dim >::momentBounds(), LSProblem< dim >::monoMaxMin(), NormalDerivativeNew< dim >::nChoosek(), NormalDerivativeNew< dim >::normal(), LSProblem< dim >::numMonomials(), LSProblem< dim >::outputMatrix(), IFSlicer< dim >::print(), LSProblem< dim >::print(), CutCellMoments< dim >::print(), IFData< dim >::print(), ComputeCutCellMoments< dim >::refine(), IFData< dim >::rootFinder(), LSProblem< dim >::setMatrix(), IFData< dim >::setNormalDerivatives(), ArSp::sizeOfDim(), ArSp::sizeOfDim< CHRange >(), CutCellMoments< dim >::sliceResidual(), IFSlicer< dim >::value(), and LSProblem< dim >::~LSProblem().

precision

ChPrecision precision

HDF5Handle

struct { ... } HDF5Handle

TYPE_NAMES

const char* TYPE_NAMES[ChTYPES]

static

ADD_tmp

Attribute* ADD_tmp

ADD_at

Attribute* ADD_at