vtkMoleculeReaderBase Class Reference

#include <vtkMoleculeReaderBase.h>

Inheritance diagram for vtkMoleculeReaderBase:

[legend]Collaboration diagram for vtkMoleculeReaderBase:

[legend]List of all members.

Detailed Description

read Molecular Data files

vtkMoleculeReaderBase is a source object that reads Molecule files The FileName must be specified

Thanks:: Dr. Jean M. Favre who developed and contributed this class

Created by:

Cedilnik, Andy

CVS contributions (if > 5%):

Cedilnik, Andy (82%)
King, Brad (7%)
Martin, Ken (6%)

CVS logs (CVSweb):

.h (/IO/vtkMoleculeReaderBase.h)
.cxx (/IO/vtkMoleculeReaderBase.cxx)

Definition at line 49 of file vtkMoleculeReaderBase.h.

Public Types

typedef vtkPolyDataSource Superclass

Public Member Functions

virtual const char * GetClassName ()

virtual int IsA (const char *type)

void PrintSelf (ostream &os, vtkIndent indent)

virtual void SetFileName (const char *)

virtual char * GetFileName ()

virtual void SetBScale (double)

virtual double GetBScale ()

virtual void SetHBScale (double)

virtual double GetHBScale ()

virtual int GetNumberOfAtoms ()

Static Public Member Functions

int IsTypeOf (const char *type)

vtkMoleculeReaderBase * SafeDownCast (vtkObject *o)

Protected Member Functions

vtkMoleculeReaderBase ()

~vtkMoleculeReaderBase ()

virtual void Execute ()

int ReadMolecule (FILE *fp)

int MakeAtomType (const char *atype)

int MakeBonds (vtkPoints *, vtkIdTypeArray *, vtkCellArray *)

virtual void ReadSpecificMolecule (FILE *fp)=0

Protected Attributes

char * FileName

double BScale

double HBScale

int NumberOfAtoms

vtkPoints * Points

vtkUnsignedCharArray * RGB

vtkFloatArray * Radii

vtkIdTypeArray * AtomType

Member Typedef Documentation

typedef vtkPolyDataSource vtkMoleculeReaderBase::Superclass

Reimplemented from vtkPolyDataSource.
Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.
Definition at line 52 of file vtkMoleculeReaderBase.h.

Constructor & Destructor Documentation

vtkMoleculeReaderBase::vtkMoleculeReaderBase ( ) [protected]

vtkMoleculeReaderBase::~vtkMoleculeReaderBase ( ) [protected]

Member Function Documentation

virtual const char* vtkMoleculeReaderBase::GetClassName ( ) [virtual]

Reimplemented from vtkPolyDataSource.
Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

int vtkMoleculeReaderBase::IsTypeOf ( const char * type ) [static]

Return 1 if this class type is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h.
Reimplemented from vtkPolyDataSource.
Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

virtual int vtkMoleculeReaderBase::IsA ( const char * type ) [virtual]

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeRevisionMacro found in vtkSetGet.h.
Reimplemented from vtkPolyDataSource.
Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

vtkMoleculeReaderBase* vtkMoleculeReaderBase::SafeDownCast ( vtkObject * o ) [static]

Reimplemented from vtkPolyDataSource.
Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

void vtkMoleculeReaderBase::PrintSelf ( ostream & os,

vtkIndent indent

) [virtual]

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from vtkPolyDataSource.
Reimplemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

virtual void vtkMoleculeReaderBase::SetFileName ( const char * ) [virtual]

Reimplemented in vtkGaussianCubeReader.

virtual char* vtkMoleculeReaderBase::GetFileName ( ) [virtual]

Reimplemented in vtkGaussianCubeReader.

virtual void vtkMoleculeReaderBase::SetBScale ( double ) [virtual]

virtual double vtkMoleculeReaderBase::GetBScale ( ) [virtual]

virtual void vtkMoleculeReaderBase::SetHBScale ( double ) [virtual]

virtual double vtkMoleculeReaderBase::GetHBScale ( ) [virtual]

virtual int vtkMoleculeReaderBase::GetNumberOfAtoms ( ) [virtual]

virtual void vtkMoleculeReaderBase::Execute ( ) [protected, virtual]

This method is the old style execute method
Reimplemented from vtkSource.
Reimplemented in vtkGaussianCubeReader.

int vtkMoleculeReaderBase::ReadMolecule ( FILE * fp ) [protected]

int vtkMoleculeReaderBase::MakeAtomType ( const char * atype ) [protected]

int vtkMoleculeReaderBase::MakeBonds ( vtkPoints * ,

vtkIdTypeArray * ,

vtkCellArray *

) [protected]

virtual void vtkMoleculeReaderBase::ReadSpecificMolecule ( FILE * fp ) [protected, pure virtual]

Implemented in vtkGaussianCubeReader, vtkPDBReader, and vtkXYZMolReader.

Member Data Documentation

char* vtkMoleculeReaderBase::FileName [protected]

Reimplemented in vtkGaussianCubeReader.
Definition at line 70 of file vtkMoleculeReaderBase.h.

double vtkMoleculeReaderBase::BScale [protected]

Definition at line 71 of file vtkMoleculeReaderBase.h.

double vtkMoleculeReaderBase::HBScale [protected]

Definition at line 73 of file vtkMoleculeReaderBase.h.

int vtkMoleculeReaderBase::NumberOfAtoms [protected]

Definition at line 75 of file vtkMoleculeReaderBase.h.

vtkPoints* vtkMoleculeReaderBase::Points [protected]

Definition at line 82 of file vtkMoleculeReaderBase.h.

vtkUnsignedCharArray* vtkMoleculeReaderBase::RGB [protected]

Definition at line 83 of file vtkMoleculeReaderBase.h.

vtkFloatArray* vtkMoleculeReaderBase::Radii [protected]

Definition at line 84 of file vtkMoleculeReaderBase.h.

vtkIdTypeArray* vtkMoleculeReaderBase::AtomType [protected]

Definition at line 85 of file vtkMoleculeReaderBase.h.

The documentation for this class was generated from the following file:

dox/IO/vtkMoleculeReaderBase.h


Public Types
typedef vtkPolyDataSource	Superclass
Public Member Functions
virtual const char *	GetClassName ()
virtual int	IsA (const char *type)
void	PrintSelf (ostream &os, vtkIndent indent)
virtual void	SetFileName (const char *)
virtual char *	GetFileName ()
virtual void	SetBScale (double)
virtual double	GetBScale ()
virtual void	SetHBScale (double)
virtual double	GetHBScale ()
virtual int	GetNumberOfAtoms ()
Static Public Member Functions
int	IsTypeOf (const char *type)
vtkMoleculeReaderBase *	SafeDownCast (vtkObject *o)
Protected Member Functions
	vtkMoleculeReaderBase ()
	~vtkMoleculeReaderBase ()
virtual void	Execute ()
int	ReadMolecule (FILE *fp)
int	MakeAtomType (const char *atype)
int	MakeBonds (vtkPoints , vtkIdTypeArray , vtkCellArray *)
virtual void	ReadSpecificMolecule (FILE *fp)=0
Protected Attributes
char *	FileName
double	BScale
double	HBScale
int	NumberOfAtoms
vtkPoints *	Points
vtkUnsignedCharArray *	RGB
vtkFloatArray *	Radii
vtkIdTypeArray *	AtomType