advance(Real a_dt) | PAmrNS | [protected] |
advectDiffuseScalar(Vector< LevelData< FArrayBox > * > &a_new_scal, Vector< LevelData< FArrayBox > * > &a_old_scal, Vector< LevelData< FluxBox > * > &a_adv_vel, const Real &a_diffusive_coeff, DomainGhostBC &a_scalPhysBC, OldPhysIBC *a_scalIBC, Real a_dt) | PAmrNS | [protected] |
advectScalar(Vector< LevelData< FArrayBox > * > &a_new_scal, Vector< LevelData< FArrayBox > * > &a_old_scal, Vector< LevelData< FluxBox > * > &a_adv_vel, OldPhysIBC *a_scalIBC, Real a_dt) | PAmrNS | [protected] |
blockFactor(int a_blockFactor) | PAmrNS | |
CFL(Real a_cfl) | PAmrNS | |
checkpointInterval(int a_checkpointInterval) | PAmrNS | |
checkpointPrefix(const string &a_prefix) | PAmrNS | |
computeAdvectionVelocities(Vector< LevelData< FluxBox > * > &a_adv_vel, Vector< LevelData< FArrayBox > * > &a_phi, Vector< LevelData< FArrayBox > * > &a_dragForce) | PAmrNS | [protected] |
computeDt() | PAmrNS | [protected] |
computeInitialDt() | PAmrNS | [protected] |
computeKineticEnergy(LevelData< FArrayBox > &a_energy, int a_level) const | PAmrNS | [protected] |
computeLapScal(Vector< LevelData< FArrayBox > * > &a_lapScal, Vector< LevelData< FArrayBox > * > &a_scal, DomainGhostBC &a_physBC) | PAmrNS | [protected] |
computeLapVel(Vector< LevelData< FArrayBox > * > &a_lapVel, Vector< LevelData< FArrayBox > * > &a_vel) | PAmrNS | [protected] |
computeUStar(Vector< LevelData< FArrayBox > * > &a_uStar, Vector< LevelData< FArrayBox > * > &a_dragForce, Vector< LevelData< FArrayBox > * > &a_Pi) | PAmrNS | [protected] |
computeVorticity(LevelData< FArrayBox > &a_vorticity, int a_level) const | PAmrNS | [protected] |
conclude() | PAmrNS | |
define(const ProblemDomain &a_baseDomain, const Vector< int > &a_vectRefRatio, const RealVect &a_domainLength, int a_maxLevel) | PAmrNS | |
defineParticles(List< DragParticle > &a_particles) const | PAmrNS | [protected] |
doRun(Real a_maxTime, int a_maxStep) | PAmrNS | |
dumpLoadBalanceInfo() const | PAmrNS | [protected] |
dumpParticlesASCII(std::ostream &os) const | PAmrNS | [protected] |
Dx(int a_level) const | PAmrNS | [inline] |
fillCheckpointData(Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_checkDataNames) | PAmrNS | [protected] |
fillRatio(Real a_fillRatio) | PAmrNS | |
fillScalars(Vector< LevelData< FArrayBox > * > &a_scal, Real a_time, const int a_comp) const | PAmrNS | [protected] |
fillVelocity(Vector< LevelData< FArrayBox > * > &a_vel, Real a_time) | PAmrNS | [protected] |
fillVelocity(Vector< LevelData< FArrayBox > * > &a_vel, Real a_time, int vel_comp, int dest_comp, int num_comp) | PAmrNS | [protected] |
finestLevel() const | PAmrNS | [inline] |
finestLevel(int a_finest_level) | PAmrNS | [protected] |
fixedDt(Real a_dt) | PAmrNS | |
getPhysBCPtr() const | PAmrNS | [protected] |
getPlotData(Vector< LevelData< FArrayBox > * > &a_plot_data) | PAmrNS | [protected] |
getPlotDataNames(Vector< string > &a_vectNames) | PAmrNS | [protected] |
initialData() | PAmrNS | [protected] |
initialGrid(const Vector< Vector< Box > > &a_new_grids, int a_baseLevel, bool a_clearStorage=false) | PAmrNS | [protected] |
initialGrid(const Vector< DisjointBoxLayout > &a_new_grids, const Vector< DisjointBoxLayout > &a_new_particle_grids, int a_baseLevel, bool a_clearStorage=false) | PAmrNS | [protected] |
initializePressure() | PAmrNS | [protected] |
interpVelToParticles(Vector< LevelData< BinFab< DragParticle > > * > &a_particles, const Vector< LevelData< FArrayBox > * > &a_velocity) | PAmrNS | [protected] |
isDefined() const | PAmrNS | |
isEmpty(int a_level) const | PAmrNS | [inline] |
limitSolverCoarsening(bool a_limitSolverCoarsening) | PAmrNS | |
loadBalance(Vector< DisjointBoxLayout > &a_vectGrids, Vector< DisjointBoxLayout > &a_vectParticleGrids, const Vector< Vector< Box > > &a_vectBoxes, int a_lbase) | PAmrNS | [protected] |
m_backgroundVel | PAmrNS | [protected] |
m_block_factor | PAmrNS | [protected] |
m_bogus_value | PAmrNS | [protected] |
m_cell_updates | PAmrNS | [protected] |
m_cfl | PAmrNS | [protected] |
m_check_interval | PAmrNS | [protected] |
m_checkpointfile_prefix | PAmrNS | [protected] |
m_coarse_average | PAmrNS | [protected] |
m_coarse_average_scal | PAmrNS | [protected] |
m_compute_scal_err | PAmrNS | [protected] |
m_correction_radius | PAmrNS | [protected] |
m_cur_step | PAmrNS | [protected] |
m_do_particles | PAmrNS | [protected] |
m_domLength | PAmrNS | [protected] |
m_doRestart | PAmrNS | [protected] |
m_dt | PAmrNS | [protected] |
m_fill_ratio | PAmrNS | [protected] |
m_finestLevel | PAmrNS | [protected] |
m_init_shrink | PAmrNS | [protected] |
m_init_vel_from_vorticity | PAmrNS | [protected] |
m_initialGridFile | PAmrNS | [protected] |
m_initialize_pressures | PAmrNS | [protected] |
m_isDefined | PAmrNS | [protected] |
m_lastcheck_step | PAmrNS | [protected] |
m_limit_vel_interp | PAmrNS | [protected] |
m_limitSolverCoarsening | PAmrNS | [protected] |
m_max_base_box_size | PAmrNS | [protected] |
m_max_box_size | PAmrNS | [protected] |
m_max_dt | PAmrNS | [protected] |
m_max_dt_grow | PAmrNS | [protected] |
m_max_scal_comps | PAmrNS | [protected] |
m_maxLevel | PAmrNS | [protected] |
m_min_dt | PAmrNS | [protected] |
m_nesting_radius | PAmrNS | [protected] |
m_nu | PAmrNS | [protected] |
m_num_init_passes | PAmrNS | [protected] |
m_num_scal_comps | PAmrNS | [protected] |
m_num_vel_comps | PAmrNS | [protected] |
m_order_vel_interp | PAmrNS | [protected] |
m_particle_body_force | PAmrNS | [protected] |
m_particle_drag_coeff | PAmrNS | [protected] |
m_particle_epsilon | PAmrNS | [protected] |
m_particle_file | PAmrNS | [protected] |
m_particle_grids_buffer | PAmrNS | [protected] |
m_particle_projector | PAmrNS | [protected] |
m_particle_update_type | PAmrNS | [protected] |
m_particleCFL | PAmrNS | [protected] |
m_particleProjCoarsening | PAmrNS | [protected] |
m_patchGod | PAmrNS | [protected] |
m_physBCPtr | PAmrNS | [protected] |
m_plot_interval | PAmrNS | [protected] |
m_plotfile_prefix | PAmrNS | [protected] |
m_ppInit | PAmrNS | [protected] |
m_prescribedDt | PAmrNS | [protected] |
m_project_initial_vel | PAmrNS | [protected] |
m_projection | PAmrNS | [protected] |
m_read_particles_from_file | PAmrNS | [protected] |
m_refine_threshold | PAmrNS | [protected] |
m_regrid_interval | PAmrNS | [protected] |
m_restart_step | PAmrNS | [protected] |
m_scal_coeffs | PAmrNS | [protected] |
m_scalarsPoissonOp_ptrs | PAmrNS | [protected] |
m_set_bogus_values | PAmrNS | [protected] |
m_specifyInitialGrids | PAmrNS | [protected] |
m_spreading_radius | PAmrNS | [protected] |
m_tag_particles | PAmrNS | [protected] |
m_tag_vorticity | PAmrNS | [protected] |
m_tags_grow | PAmrNS | [protected] |
m_time | PAmrNS | [protected] |
m_update_velocity | PAmrNS | [protected] |
m_use_image_particles | PAmrNS | [protected] |
m_vectBoxes | PAmrNS | [protected] |
m_vectDomain | PAmrNS | [protected] |
m_vectDx | PAmrNS | [protected] |
m_vectGrids | PAmrNS | [protected] |
m_vectNewScal | PAmrNS | [protected] |
m_vectNewVel | PAmrNS | [protected] |
m_vectOldScal | PAmrNS | [protected] |
m_vectOldVel | PAmrNS | [protected] |
m_vectParticleGrids | PAmrNS | [protected] |
m_vectParticles | PAmrNS | [protected] |
m_vectPi | PAmrNS | [protected] |
m_vectRefRatio | PAmrNS | [protected] |
m_velCFInterp_ptrs | PAmrNS | [protected] |
m_verbosity | PAmrNS | [protected] |
m_viscous_num_smooth_down | PAmrNS | [protected] |
m_viscous_num_smooth_up | PAmrNS | [protected] |
m_viscous_solver_tol | PAmrNS | [protected] |
m_viscous_solver_type | PAmrNS | [protected] |
m_vort_factor | PAmrNS | [protected] |
m_write_divergence | PAmrNS | [protected] |
m_write_dScalar_dt | PAmrNS | [protected] |
m_write_error | PAmrNS | [protected] |
m_write_grids | PAmrNS | [protected] |
m_write_initial_solve_rhs | PAmrNS | [protected] |
m_write_particles | PAmrNS | [protected] |
m_write_proc_ids | PAmrNS | [protected] |
m_write_scalars | PAmrNS | [protected] |
m_write_time_derivatives | PAmrNS | [protected] |
m_write_vorticity | PAmrNS | [protected] |
maxBaseGridSize(int a_maxBaseGridSize) | PAmrNS | |
maxDtGrow(Real &a_maxDtGrow) | PAmrNS | |
maxGridSize(int a_maxGridSize) | PAmrNS | |
maxLevel() const | PAmrNS | [inline] |
newScal(const int a_comp, int a_level) | PAmrNS | [protected] |
newScal(const int a_comp, int a_level) const | PAmrNS | [protected] |
newVel(int a_level) | PAmrNS | [protected] |
newVel(int a_level) const | PAmrNS | [protected] |
Nu() const | PAmrNS | [inline] |
numParticles(int a_level) const | PAmrNS | [protected] |
numPlotComps() const | PAmrNS | [protected] |
oldScal(const int a_comp, int a_level) | PAmrNS | [protected] |
oldScal(const int a_comp, int a_level) const | PAmrNS | [protected] |
oldVel(int a_level) | PAmrNS | [protected] |
oldVel(int a_level) const | PAmrNS | [protected] |
PAmrNS() | PAmrNS | |
PAmrNS(const ProblemDomain &a_vectDomain, const Vector< int > &a_vectRefRatio, const RealVect &a_domainLength, int a_maxLevel) | PAmrNS | |
particleCFL(Real a_particle_cfl) | PAmrNS | |
particleKineticEnergy() const | PAmrNS | [protected] |
particles(int a_level) | PAmrNS | [protected] |
particles(int a_level) const | PAmrNS | [protected] |
plotInterval(int a_plotInterval) | PAmrNS | |
plotPrefix(const string &a_prefix) | PAmrNS | |
postInitialize() | PAmrNS | [protected] |
postRegrid() | PAmrNS | [protected] |
postTimeStep() | PAmrNS | [protected] |
predictVelocities(Vector< LevelData< FArrayBox > * > &a_uDelU, Vector< LevelData< FluxBox > * > &a_advVel, Vector< LevelData< FArrayBox > * > &a_phi, Vector< LevelData< FArrayBox > * > &a_dragForce) | PAmrNS | [protected] |
readParameters() | PAmrNS | [protected] |
refinementThreshold(Real a_refine_threshold) | PAmrNS | |
regrid() | PAmrNS | [protected] |
regrid(const Vector< Vector< Box > > &a_new_grids) | PAmrNS | [protected] |
regridInterval(int a_regridInterval) | PAmrNS | |
resetStates(const Real a_time) | PAmrNS | [protected] |
s_scal_names | PAmrNS | [protected, static] |
s_vel_names | PAmrNS | [protected, static] |
scalars(LevelData< FArrayBox > &a_scalars, const Real a_time, const int a_comp, int a_level) const | PAmrNS | [protected] |
setDefaultValues() | PAmrNS | [protected] |
setPhysBC(const PhysBCUtil &a_BC) | PAmrNS | |
setup() | PAmrNS | [protected] |
setupForAmrRun() | PAmrNS | |
setupForFixedHierarchyRun(Vector< Vector< Box > > &a_vectBoxes) | PAmrNS | |
setupForRestart(const string &a_restartFile) | PAmrNS | |
setupForRestart(const HDF5Handle &a_restartFile) | PAmrNS | |
swapOldAndNewStates() | PAmrNS | [protected] |
tagCells(Vector< IntVectSet > &a_tags) | PAmrNS | [protected] |
tagCellsInit(Vector< IntVectSet > &a_tags) | PAmrNS | [protected] |
tagCellsLevel(IntVectSet &a_tags, int a_level) | PAmrNS | [protected] |
updateParticleForces(Vector< LevelData< BinFab< DragParticle > > * > &a_particles) | PAmrNS | [protected] |
updateParticlePositions(Vector< LevelData< FArrayBox > * > &a_newDrag, Vector< LevelData< BinFab< DragParticle > > * > &a_particles, const Vector< LevelData< FArrayBox > * > &a_fluidVel, bool a_completeUpdate) | PAmrNS | [protected] |
velocity(LevelData< FArrayBox > &a_vel, Real a_time, int a_level) const | PAmrNS | [protected] |
verbosity(int a_verbosity) | PAmrNS | |
~PAmrNS() | PAmrNS | |