| advance(Real a_dt) | PAmrNS | [protected] |
| advectDiffuseScalar(Vector< LevelData< FArrayBox > * > &a_new_scal, Vector< LevelData< FArrayBox > * > &a_old_scal, Vector< LevelData< FluxBox > * > &a_adv_vel, const Real &a_diffusive_coeff, DomainGhostBC &a_scalPhysBC, OldPhysIBC *a_scalIBC, Real a_dt) | PAmrNS | [protected] |
| advectScalar(Vector< LevelData< FArrayBox > * > &a_new_scal, Vector< LevelData< FArrayBox > * > &a_old_scal, Vector< LevelData< FluxBox > * > &a_adv_vel, OldPhysIBC *a_scalIBC, Real a_dt) | PAmrNS | [protected] |
| blockFactor(int a_blockFactor) | PAmrNS | |
| CFL(Real a_cfl) | PAmrNS | |
| checkpointInterval(int a_checkpointInterval) | PAmrNS | |
| checkpointPrefix(const string &a_prefix) | PAmrNS | |
| computeAdvectionVelocities(Vector< LevelData< FluxBox > * > &a_adv_vel, Vector< LevelData< FArrayBox > * > &a_phi, Vector< LevelData< FArrayBox > * > &a_dragForce) | PAmrNS | [protected] |
| computeDt() | PAmrNS | [protected] |
| computeInitialDt() | PAmrNS | [protected] |
| computeKineticEnergy(LevelData< FArrayBox > &a_energy, int a_level) const | PAmrNS | [protected] |
| computeLapScal(Vector< LevelData< FArrayBox > * > &a_lapScal, Vector< LevelData< FArrayBox > * > &a_scal, DomainGhostBC &a_physBC) | PAmrNS | [protected] |
| computeLapVel(Vector< LevelData< FArrayBox > * > &a_lapVel, Vector< LevelData< FArrayBox > * > &a_vel) | PAmrNS | [protected] |
| computeUStar(Vector< LevelData< FArrayBox > * > &a_uStar, Vector< LevelData< FArrayBox > * > &a_dragForce, Vector< LevelData< FArrayBox > * > &a_Pi) | PAmrNS | [protected] |
| computeVorticity(LevelData< FArrayBox > &a_vorticity, int a_level) const | PAmrNS | [protected] |
| conclude() | PAmrNS | |
| define(const ProblemDomain &a_baseDomain, const Vector< int > &a_vectRefRatio, const RealVect &a_domainLength, int a_maxLevel) | PAmrNS | |
| defineParticles(List< DragParticle > &a_particles) const | PAmrNS | [protected] |
| doRun(Real a_maxTime, int a_maxStep) | PAmrNS | |
| dumpLoadBalanceInfo() const | PAmrNS | [protected] |
| dumpParticlesASCII(std::ostream &os) const | PAmrNS | [protected] |
| Dx(int a_level) const | PAmrNS | [inline] |
| fillCheckpointData(Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_checkDataNames) | PAmrNS | [protected] |
| fillRatio(Real a_fillRatio) | PAmrNS | |
| fillScalars(Vector< LevelData< FArrayBox > * > &a_scal, Real a_time, const int a_comp) const | PAmrNS | [protected] |
| fillVelocity(Vector< LevelData< FArrayBox > * > &a_vel, Real a_time) | PAmrNS | [protected] |
| fillVelocity(Vector< LevelData< FArrayBox > * > &a_vel, Real a_time, int vel_comp, int dest_comp, int num_comp) | PAmrNS | [protected] |
| finestLevel() const | PAmrNS | [inline] |
| finestLevel(int a_finest_level) | PAmrNS | [protected] |
| fixedDt(Real a_dt) | PAmrNS | |
| getPhysBCPtr() const | PAmrNS | [protected] |
| getPlotData(Vector< LevelData< FArrayBox > * > &a_plot_data) | PAmrNS | [protected] |
| getPlotDataNames(Vector< string > &a_vectNames) | PAmrNS | [protected] |
| initialData() | PAmrNS | [protected] |
| initialGrid(const Vector< Vector< Box > > &a_new_grids, int a_baseLevel, bool a_clearStorage=false) | PAmrNS | [protected] |
| initialGrid(const Vector< DisjointBoxLayout > &a_new_grids, const Vector< DisjointBoxLayout > &a_new_particle_grids, int a_baseLevel, bool a_clearStorage=false) | PAmrNS | [protected] |
| initializePressure() | PAmrNS | [protected] |
| interpVelToParticles(Vector< LevelData< BinFab< DragParticle > > * > &a_particles, const Vector< LevelData< FArrayBox > * > &a_velocity) | PAmrNS | [protected] |
| isDefined() const | PAmrNS | |
| isEmpty(int a_level) const | PAmrNS | [inline] |
| limitSolverCoarsening(bool a_limitSolverCoarsening) | PAmrNS | |
| loadBalance(Vector< DisjointBoxLayout > &a_vectGrids, Vector< DisjointBoxLayout > &a_vectParticleGrids, const Vector< Vector< Box > > &a_vectBoxes, int a_lbase) | PAmrNS | [protected] |
| m_backgroundVel | PAmrNS | [protected] |
| m_block_factor | PAmrNS | [protected] |
| m_bogus_value | PAmrNS | [protected] |
| m_cell_updates | PAmrNS | [protected] |
| m_cfl | PAmrNS | [protected] |
| m_check_interval | PAmrNS | [protected] |
| m_checkpointfile_prefix | PAmrNS | [protected] |
| m_coarse_average | PAmrNS | [protected] |
| m_coarse_average_scal | PAmrNS | [protected] |
| m_compute_scal_err | PAmrNS | [protected] |
| m_correction_radius | PAmrNS | [protected] |
| m_cur_step | PAmrNS | [protected] |
| m_do_particles | PAmrNS | [protected] |
| m_domLength | PAmrNS | [protected] |
| m_doRestart | PAmrNS | [protected] |
| m_dt | PAmrNS | [protected] |
| m_fill_ratio | PAmrNS | [protected] |
| m_finestLevel | PAmrNS | [protected] |
| m_init_shrink | PAmrNS | [protected] |
| m_init_vel_from_vorticity | PAmrNS | [protected] |
| m_initialGridFile | PAmrNS | [protected] |
| m_initialize_pressures | PAmrNS | [protected] |
| m_isDefined | PAmrNS | [protected] |
| m_lastcheck_step | PAmrNS | [protected] |
| m_limit_vel_interp | PAmrNS | [protected] |
| m_limitSolverCoarsening | PAmrNS | [protected] |
| m_max_base_box_size | PAmrNS | [protected] |
| m_max_box_size | PAmrNS | [protected] |
| m_max_dt | PAmrNS | [protected] |
| m_max_dt_grow | PAmrNS | [protected] |
| m_max_scal_comps | PAmrNS | [protected] |
| m_maxLevel | PAmrNS | [protected] |
| m_min_dt | PAmrNS | [protected] |
| m_nesting_radius | PAmrNS | [protected] |
| m_nu | PAmrNS | [protected] |
| m_num_init_passes | PAmrNS | [protected] |
| m_num_scal_comps | PAmrNS | [protected] |
| m_num_vel_comps | PAmrNS | [protected] |
| m_order_vel_interp | PAmrNS | [protected] |
| m_particle_body_force | PAmrNS | [protected] |
| m_particle_drag_coeff | PAmrNS | [protected] |
| m_particle_epsilon | PAmrNS | [protected] |
| m_particle_file | PAmrNS | [protected] |
| m_particle_grids_buffer | PAmrNS | [protected] |
| m_particle_projector | PAmrNS | [protected] |
| m_particle_update_type | PAmrNS | [protected] |
| m_particleCFL | PAmrNS | [protected] |
| m_particleProjCoarsening | PAmrNS | [protected] |
| m_patchGod | PAmrNS | [protected] |
| m_physBCPtr | PAmrNS | [protected] |
| m_plot_interval | PAmrNS | [protected] |
| m_plotfile_prefix | PAmrNS | [protected] |
| m_ppInit | PAmrNS | [protected] |
| m_prescribedDt | PAmrNS | [protected] |
| m_project_initial_vel | PAmrNS | [protected] |
| m_projection | PAmrNS | [protected] |
| m_read_particles_from_file | PAmrNS | [protected] |
| m_refine_threshold | PAmrNS | [protected] |
| m_regrid_interval | PAmrNS | [protected] |
| m_restart_step | PAmrNS | [protected] |
| m_scal_coeffs | PAmrNS | [protected] |
| m_scalarsPoissonOp_ptrs | PAmrNS | [protected] |
| m_set_bogus_values | PAmrNS | [protected] |
| m_specifyInitialGrids | PAmrNS | [protected] |
| m_spreading_radius | PAmrNS | [protected] |
| m_tag_particles | PAmrNS | [protected] |
| m_tag_vorticity | PAmrNS | [protected] |
| m_tags_grow | PAmrNS | [protected] |
| m_time | PAmrNS | [protected] |
| m_update_velocity | PAmrNS | [protected] |
| m_use_image_particles | PAmrNS | [protected] |
| m_vectBoxes | PAmrNS | [protected] |
| m_vectDomain | PAmrNS | [protected] |
| m_vectDx | PAmrNS | [protected] |
| m_vectGrids | PAmrNS | [protected] |
| m_vectNewScal | PAmrNS | [protected] |
| m_vectNewVel | PAmrNS | [protected] |
| m_vectOldScal | PAmrNS | [protected] |
| m_vectOldVel | PAmrNS | [protected] |
| m_vectParticleGrids | PAmrNS | [protected] |
| m_vectParticles | PAmrNS | [protected] |
| m_vectPi | PAmrNS | [protected] |
| m_vectRefRatio | PAmrNS | [protected] |
| m_velCFInterp_ptrs | PAmrNS | [protected] |
| m_verbosity | PAmrNS | [protected] |
| m_viscous_num_smooth_down | PAmrNS | [protected] |
| m_viscous_num_smooth_up | PAmrNS | [protected] |
| m_viscous_solver_tol | PAmrNS | [protected] |
| m_viscous_solver_type | PAmrNS | [protected] |
| m_vort_factor | PAmrNS | [protected] |
| m_write_divergence | PAmrNS | [protected] |
| m_write_dScalar_dt | PAmrNS | [protected] |
| m_write_error | PAmrNS | [protected] |
| m_write_grids | PAmrNS | [protected] |
| m_write_initial_solve_rhs | PAmrNS | [protected] |
| m_write_particles | PAmrNS | [protected] |
| m_write_proc_ids | PAmrNS | [protected] |
| m_write_scalars | PAmrNS | [protected] |
| m_write_time_derivatives | PAmrNS | [protected] |
| m_write_vorticity | PAmrNS | [protected] |
| maxBaseGridSize(int a_maxBaseGridSize) | PAmrNS | |
| maxDtGrow(Real &a_maxDtGrow) | PAmrNS | |
| maxGridSize(int a_maxGridSize) | PAmrNS | |
| maxLevel() const | PAmrNS | [inline] |
| newScal(const int a_comp, int a_level) | PAmrNS | [protected] |
| newScal(const int a_comp, int a_level) const | PAmrNS | [protected] |
| newVel(int a_level) | PAmrNS | [protected] |
| newVel(int a_level) const | PAmrNS | [protected] |
| Nu() const | PAmrNS | [inline] |
| numParticles(int a_level) const | PAmrNS | [protected] |
| numPlotComps() const | PAmrNS | [protected] |
| oldScal(const int a_comp, int a_level) | PAmrNS | [protected] |
| oldScal(const int a_comp, int a_level) const | PAmrNS | [protected] |
| oldVel(int a_level) | PAmrNS | [protected] |
| oldVel(int a_level) const | PAmrNS | [protected] |
| PAmrNS() | PAmrNS | |
| PAmrNS(const ProblemDomain &a_vectDomain, const Vector< int > &a_vectRefRatio, const RealVect &a_domainLength, int a_maxLevel) | PAmrNS | |
| particleCFL(Real a_particle_cfl) | PAmrNS | |
| particleKineticEnergy() const | PAmrNS | [protected] |
| particles(int a_level) | PAmrNS | [protected] |
| particles(int a_level) const | PAmrNS | [protected] |
| plotInterval(int a_plotInterval) | PAmrNS | |
| plotPrefix(const string &a_prefix) | PAmrNS | |
| postInitialize() | PAmrNS | [protected] |
| postRegrid() | PAmrNS | [protected] |
| postTimeStep() | PAmrNS | [protected] |
| predictVelocities(Vector< LevelData< FArrayBox > * > &a_uDelU, Vector< LevelData< FluxBox > * > &a_advVel, Vector< LevelData< FArrayBox > * > &a_phi, Vector< LevelData< FArrayBox > * > &a_dragForce) | PAmrNS | [protected] |
| readParameters() | PAmrNS | [protected] |
| refinementThreshold(Real a_refine_threshold) | PAmrNS | |
| regrid() | PAmrNS | [protected] |
| regrid(const Vector< Vector< Box > > &a_new_grids) | PAmrNS | [protected] |
| regridInterval(int a_regridInterval) | PAmrNS | |
| resetStates(const Real a_time) | PAmrNS | [protected] |
| s_scal_names | PAmrNS | [protected, static] |
| s_vel_names | PAmrNS | [protected, static] |
| scalars(LevelData< FArrayBox > &a_scalars, const Real a_time, const int a_comp, int a_level) const | PAmrNS | [protected] |
| setDefaultValues() | PAmrNS | [protected] |
| setPhysBC(const PhysBCUtil &a_BC) | PAmrNS | |
| setup() | PAmrNS | [protected] |
| setupForAmrRun() | PAmrNS | |
| setupForFixedHierarchyRun(Vector< Vector< Box > > &a_vectBoxes) | PAmrNS | |
| setupForRestart(const string &a_restartFile) | PAmrNS | |
| setupForRestart(const HDF5Handle &a_restartFile) | PAmrNS | |
| swapOldAndNewStates() | PAmrNS | [protected] |
| tagCells(Vector< IntVectSet > &a_tags) | PAmrNS | [protected] |
| tagCellsInit(Vector< IntVectSet > &a_tags) | PAmrNS | [protected] |
| tagCellsLevel(IntVectSet &a_tags, int a_level) | PAmrNS | [protected] |
| updateParticleForces(Vector< LevelData< BinFab< DragParticle > > * > &a_particles) | PAmrNS | [protected] |
| updateParticlePositions(Vector< LevelData< FArrayBox > * > &a_newDrag, Vector< LevelData< BinFab< DragParticle > > * > &a_particles, const Vector< LevelData< FArrayBox > * > &a_fluidVel, bool a_completeUpdate) | PAmrNS | [protected] |
| velocity(LevelData< FArrayBox > &a_vel, Real a_time, int a_level) const | PAmrNS | [protected] |
| verbosity(int a_verbosity) | PAmrNS | |
| ~PAmrNS() | PAmrNS | |