Chombo + EB
3.0
|
#include "REAL.H"
#include "LevelData.H"
#include "RealVect.H"
#include "Vector.H"
#include "NodeFArrayBox.H"
#include <string>
#include "IntVect.H"
#include "NamespaceHeader.H"
#include "NamespaceFooter.H"
Go to the source code of this file.
Macros | |
#define | _NODEAMRIO_H_ |
Functions | |
void | WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels, const RealVect &a_origin=RealVect::Zero, const Interval &a_comps=Interval()) |
void | WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< Vector< LevelData< NodeFArrayBox > * > > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels) |
void | WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels, const RealVect &a_origin=RealVect::Zero, const Interval &a_comps=Interval()) |
void | WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels) |
void | WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels) |
int | ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false) |
int | ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false) |
int | ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false) |
int | ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false) |
void | writeNFAB (const NodeFArrayBox *a_dataPtr) |
void | viewNFAB (const NodeFArrayBox *a_dataPtr) |
void | writeNFABname (const NodeFArrayBox *a_dataPtr, const char *a_filename) |
void | writeNodeLevel (const LevelData< NodeFArrayBox > *a_dataPtr) |
void | viewNodeLevel (const LevelData< NodeFArrayBox > *a_dataPtr) |
void | writeNodeLevelname (const LevelData< NodeFArrayBox > *a_dataPtr, const char *a_filename) |
void | WritePartialAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_baseDomain, const Real &a_baseDx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const Interval &a_levels) |
void | WritePartialAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< Vector< LevelData< NodeFArrayBox > * > > &a_vectData, const Vector< string > &a_vectNames, const Box &a_baseDomain, const Real &a_baseDx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const Interval &a_levels) |
#define _NODEAMRIO_H_ |
void WriteAMRHierarchyHDF5 | ( | const string & | filename, |
const Vector< DisjointBoxLayout > & | a_vectGrids, | ||
const Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
const Vector< string > & | a_vectNames, | ||
const Box & | a_domain, | ||
const Real & | a_dx, | ||
const Real & | a_dt, | ||
const Real & | a_time, | ||
const Vector< int > & | a_vectRatio, | ||
const int & | a_numLevels, | ||
const RealVect & | a_origin = RealVect::Zero , |
||
const Interval & | a_comps = Interval() |
||
) |
Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.
This is blocking.
filename | file to send output to |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_vectNames | names of variables in a_vectData |
a_domain | domain at coarsest level |
a_dx | grid spacing at coarsest level |
a_dt | time step at coarsest level |
a_time | time |
a_vectRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to write out |
a_origin | physical coordinates of lower corner of cell at IntVect 0 |
a_comps | Interval of components to be written |
void WriteAMRHierarchyHDF5 | ( | const string & | filename, |
const Vector< DisjointBoxLayout > & | a_vectGrids, | ||
const Vector< Vector< LevelData< NodeFArrayBox > * > > & | a_vectData, | ||
const Vector< string > & | a_vectNames, | ||
const Box & | a_domain, | ||
const Real & | a_dx, | ||
const Real & | a_dt, | ||
const Real & | a_time, | ||
const Vector< int > & | a_vectRatio, | ||
const int & | a_numLevels | ||
) |
Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.
This function differs from the previous one in that a_vectData[ind][lev] indexes a LevelData<NodeFArrayBox>* (which may have several components) at level lev.
This is blocking.
filename | file to send output to |
a_vectGrids | grids at each level |
a_vectData | data indexed by set and then by level |
a_vectNames | names of variables in a_vectData: first the names of the components of a_vectData[0], then the names of the components of a_vectData[1], etc. |
a_domain | domain at coarsest level |
a_dx | grid spacing at coarsest level |
a_dt | time step at coarsest level |
a_time | time |
a_vectRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to write out |
void WriteAMRHierarchyHDF5 | ( | HDF5Handle & | handle, |
const Vector< DisjointBoxLayout > & | a_vectGrids, | ||
const Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
const Vector< string > & | a_vectNames, | ||
const Box & | a_domain, | ||
const Real & | a_dx, | ||
const Real & | a_dt, | ||
const Real & | a_time, | ||
const Vector< int > & | a_vectRatio, | ||
const int & | a_numLevels, | ||
const RealVect & | a_origin = RealVect::Zero , |
||
const Interval & | a_comps = Interval() |
||
) |
Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.
This is not blocking.
handle | handle to send output to |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_vectNames | names of variables in a_vectData |
a_domain | domain at coarsest level |
a_dx | grid spacing at coarsest level |
a_dt | time step at coarsest level |
a_time | time |
a_vectRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to write out |
a_origin | physical coordinates of lower corner of cell at IntVect 0 |
a_comps | Interval of components to be written |
void WriteAMRHierarchyHDF5 | ( | const string & | filename, |
const Vector< DisjointBoxLayout > & | a_vectGrids, | ||
const Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
const Box & | a_domain, | ||
const Vector< int > & | a_vectRatio, | ||
const int & | a_numLevels | ||
) |
Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.
This is blocking.
filename | file to send output to |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_domain | domain at coarsest level |
a_vectRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to write out |
void WriteAMRHierarchyHDF5 | ( | HDF5Handle & | handle, |
const Vector< DisjointBoxLayout > & | a_vectGrids, | ||
const Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
const Box & | a_domain, | ||
const Vector< int > & | a_vectRatio, | ||
const int & | a_numLevels | ||
) |
Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation.
This is not blocking.
handle | handle to send output to |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_domain | domain at coarsest level |
a_vectRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to write out |
int ReadAMRHierarchyHDF5 | ( | const string & | filename, |
Vector< DisjointBoxLayout > & | a_vectGrids, | ||
Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
Vector< string > & | a_vectNames, | ||
Box & | a_domain, | ||
Real & | a_dx, | ||
Real & | a_dt, | ||
Real & | a_time, | ||
Vector< int > & | a_refRatio, | ||
int & | a_numLevels, | ||
bool | a_setGhost = false |
||
) |
Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.
Returns status code with values:
This is blocking.
filename | file to read input from |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_vectNames | names of variables in a_vectData |
a_domain | domain at coarsest level |
a_dx | grid spacing at coarsest level |
a_dt | time step at coarsest level |
a_time | time |
a_refRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to read in |
int ReadAMRHierarchyHDF5 | ( | HDF5Handle & | handle, |
Vector< DisjointBoxLayout > & | a_vectGrids, | ||
Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
Vector< string > & | a_vectNames, | ||
Box & | a_domain, | ||
Real & | a_dx, | ||
Real & | a_dt, | ||
Real & | a_time, | ||
Vector< int > & | a_refRatio, | ||
int & | a_numLevels, | ||
bool | a_setGhost = false |
||
) |
Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.
Returns status code with values:
This is not blocking.
handle | handle to read input from |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_vectNames | names of variables in a_vectData |
a_domain | domain at coarsest level |
a_dx | grid spacing at coarsest level |
a_dt | time step at coarsest level |
a_time | time |
a_refRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to read in |
int ReadAMRHierarchyHDF5 | ( | const string & | filename, |
Vector< DisjointBoxLayout > & | a_vectGrids, | ||
Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
Box & | a_domain, | ||
Vector< int > & | a_refRatio, | ||
int & | a_numLevels, | ||
bool | a_setGhost = false |
||
) |
Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.
Returns status code with values:
This is blocking.
filename | file to read input from |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_domain | domain at coarsest level |
a_refRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to read in |
int ReadAMRHierarchyHDF5 | ( | HDF5Handle & | handle, |
Vector< DisjointBoxLayout > & | a_vectGrids, | ||
Vector< LevelData< NodeFArrayBox > * > & | a_vectData, | ||
Box & | a_domain, | ||
Vector< int > & | a_refRatio, | ||
int & | a_numLevels, | ||
bool | a_setGhost = false |
||
) |
Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success.
Returns status code with values:
This is not blocking.
handle | handle to input from |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_domain | domain at coarsest level |
a_refRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_numLevels | number of levels to read in |
void writeNFAB | ( | const NodeFArrayBox * | a_dataPtr | ) |
Writes a plotfile using the same format as WriteAMRHierarchyHDF5, but for a NodeFArrayBox. This is useful for debugging. a_dataPtr is written to a file named nfab.hdf5
Referenced by InitWriteFAB().
void viewNFAB | ( | const NodeFArrayBox * | a_dataPtr | ) |
View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running ChomboVis with a python script which brings up a data browser by default. The file has the same format as WriteAMRHierarchyHDF5, but for a single NodeFArrayBox. This is useful for debugging.
Referenced by InitWriteFAB().
void writeNFABname | ( | const NodeFArrayBox * | a_dataPtr, |
const char * | a_filename | ||
) |
Writes a plotfile using the same format as WriteAMRHierarchyHDF5, but for a NodeFArrayBox. This is useful for debugging. a_dataPtr is written to the file given by a_filename.
Referenced by InitWriteFAB().
void writeNodeLevel | ( | const LevelData< NodeFArrayBox > * | a_dataPtr | ) |
Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<NodeFArrayBox>. Useful for debugging. a_dataPtr is written to a file named LDF.hdf5.
Referenced by InitWriteFAB().
void viewNodeLevel | ( | const LevelData< NodeFArrayBox > * | a_dataPtr | ) |
View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running ChomboVis with a python script which brings up a data browser by default. The file has the same format as WriteAMRHierarchyHDF5, but for a single LevelData<NodeFArrayBox>. This is useful for debugging.
Referenced by InitWriteFAB().
void writeNodeLevelname | ( | const LevelData< NodeFArrayBox > * | a_dataPtr, |
const char * | a_filename | ||
) |
Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<FArrayBox>. Useful for debugging. a_dataPtr is written to the file given by a_filename.
Referenced by InitWriteFAB().
void WritePartialAMRHierarchyHDF5 | ( | const string & | filename, |
const Vector< DisjointBoxLayout > & | a_vectGrids, | ||
const Vector< LevelData< FArrayBox > * > & | a_vectData, | ||
const Vector< string > & | a_vectNames, | ||
const Box & | a_baseDomain, | ||
const Real & | a_baseDx, | ||
const Real & | a_dt, | ||
const Real & | a_time, | ||
const Vector< int > & | a_vectRatio, | ||
const Interval & | a_levels | ||
) |
Write a plotfile with levels that don't necessarily begin with 0 (will translate things so that base level comes out as level 0, etc.). Levels in Vector arguments should correspond with actual levels, and so should be defined for a_levels.begin() through a_levels.end().
This is blocking.
filename | file to send output to |
a_vectGrids | grids at each level |
a_vectData | data indexed by level |
a_vectNames | names of variables in a_vectData |
a_baseDomain | domain at base level given by a_levels.begin() |
a_baseDx | grid spacing at base level |
a_dt | time step at base level |
a_time | time |
a_vectRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_levels | indices of levels to write out |
void WritePartialAMRHierarchyHDF5 | ( | const string & | filename, |
const Vector< DisjointBoxLayout > & | a_vectGrids, | ||
const Vector< Vector< LevelData< NodeFArrayBox > * > > & | a_vectData, | ||
const Vector< string > & | a_vectNames, | ||
const Box & | a_baseDomain, | ||
const Real & | a_baseDx, | ||
const Real & | a_dt, | ||
const Real & | a_time, | ||
const Vector< int > & | a_vectRatio, | ||
const Interval & | a_levels | ||
) |
Write a plotfile with levels that don't necessarily begin with 0 (will translate things so that base level comes out as level 0, etc.). Levels in Vector arguments should correspond with actual levels, and so should be defined for a_levels.begin() through a_levels.end().
This function differs from the previous one in that a_vectData[ind][lev] indexes a LevelData<NodeFArrayBox>* (which may have several components) at level lev.
This is blocking.
filename | file to send output to |
a_vectGrids | grids at each level |
a_vectData | data indexed by set and then by level |
a_vectNames | names of variables in a_vectData |
a_baseDomain | domain at base level given by a_levels.begin() |
a_baseDx | grid spacing at base level |
a_dt | time step at base level |
a_time | time |
a_vectRatio | refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 |
a_levels | indices of levels to write out |