A BoxLayout that has a concept of disjointedness. More...

#include <DisjointBoxLayout.H>

Inheritance diagram for DisjointBoxLayout:

Public Member Functions
const ProblemDomain &	physDomain () const

virtual void	closeNoSort ()

Constructors, destructors, defines
	DisjointBoxLayout ()

	DisjointBoxLayout (const Vector< Box > &a_boxes, const Vector< int > &a_procIDs)

	DisjointBoxLayout (const Vector< Box > &a_boxes, const Vector< int > &a_procIDs, const ProblemDomain &a_physDomain)

virtual	~DisjointBoxLayout ()

virtual void	define (const Vector< Box > &a_boxes, const Vector< int > &a_procIDs)

void	defineAndLoadBalance (const Vector< Box > &a_boxes, Vector< int > *a_procIDs)

void	defineAndLoadBalance (const Vector< Box > &a_boxes, Vector< int > *a_procIDs, const ProblemDomain &a_physDomain)

void	define (const BoxLayout &a_layout)

void	define (const BoxLayout &a_layout, const ProblemDomain &a_physDomain)

virtual void	define (const Vector< Box > &a_boxes, const Vector< int > &a_procIDs, const ProblemDomain &a_physDomain)

virtual void	define_pd (const Vector< Box > &a_boxes, const Vector< int > &a_procIDs, const ProblemDomain &a_physDomain)

Checks
bool	isDisjoint () const

bool	checkPeriodic (const ProblemDomain &a_domain) const

bool	checkDomains (const DisjointBoxLayout &a_dbl) const

Public Member Functions inherited from BoxLayout
Vector< Box >	boxArray () const

Vector< int >	procIDs () const

unsigned int	indexI (const LayoutIndex &) const

	BoxLayout ()

	BoxLayout (const Vector< Box > &a_boxes, const Vector< int > &a_procIDs)

void	transform (BaseTransform &a_transform)

virtual	~BoxLayout ()

BoxLayout &	operator= (const BoxLayout &a_rhs)

Box	operator[] (const LayoutIndex &it) const

Box	operator[] (const LayoutIterator &it) const

Box	operator[] (const DataIterator &it) const

Box	get (const LayoutIndex &it) const

Box	get (const DataIterator &it) const

Box	get (const LayoutIterator &it) const

unsigned int	procID (const LayoutIndex &a_index) const

bool	sameBoxes (const BoxLayout &a_layout) const
	Checks whether this layout has the same boxes in the same order as a_layout. More...

int	numBoxes (const int procID) const
	Returns the number of boxes assigned to a given procID. More...

long long	numCells () const
	Return number of cells in all boxes of entire box layout. More...

unsigned int	size () const
	Returns the total number of boxes in the BoxLayout. More...

unsigned int	index (const LayoutIndex &index) const

unsigned int	lindex (const DataIndex &index) const

bool	operator== (const BoxLayout &rhs) const

bool	operator< (const BoxLayout &rhs) const

int	refCount () const

bool	eq (const BoxLayout &rhs) const

bool	isClosed () const

bool	isSorted () const

bool	check (const LayoutIndex &index) const

bool	compatible (const BoxLayout &a_rhs) const

DataIterator	dataIterator () const
	Parallel iterator. More...

TimedDataIterator	timedDataIterator () const

LayoutIterator	layoutIterator () const
	Iterator that processes through ALL the boxes in a BoxLayout. More...

void	print () const

void	p () const

bool	coarsenable (int refRatio) const

void	growSide (int idir, int length, Side::LoHiSide a_sd)

void	surroundingNodes ()

void	convertOldToNew (const IntVect &a_permutation, const IntVect &a_sign, const IntVect &a_translation)

void	convertNewToOld (const IntVect &a_permutation, const IntVect &a_sign, const IntVect &a_translation)

void	enclosedCells ()

void	coarsen (int a_ref)

void	refine (int a_ref)

void	grow (int a_growth)

void	grow (IntVect a_growth)

void	grow (int a_dir, int a_growth)

void	adjCellSide (int a_dir, int a_len, Side::LoHiSide a_sd)

void	operator &= (const Box &a_box)

void	operator &= (const ProblemDomain &a_domain)

void	setProcID (const LayoutIndex &a_index, unsigned int a_procID)

void	sort ()

Protected Member Functions
void	computeNeighbors ()

virtual void	closeN (RefCountedPtr< Vector< Vector< std::pair< int, LayoutIndex > > > > neighbors)

virtual void	closeNO ()

Protected Member Functions inherited from BoxLayout
void	buildDataIndex ()

void	checkDefine (const Vector< Box > &a_boxes, const Vector< int > &procIDs)

Protected Attributes
ProblemDomain	m_physDomain

RefCountedPtr< Vector< Vector< std::pair< int, LayoutIndex > > > >	m_neighbors

Protected Attributes inherited from BoxLayout
RefCountedPtr< Vector< Entry > >	m_boxes

RefCountedPtr< int >	m_layout

RefCountedPtr< bool >	m_closed

RefCountedPtr< bool >	m_sorted

RefCountedPtr< DataIterator >	m_dataIterator

RefCountedPtr< Vector< LayoutIndex > >	m_indicies

Friends
class	Copier

class	NeighborIterator

Neighbor functions
void	adjCellLo (DisjointBoxLayout &a_output, const DisjointBoxLayout &a_input, int a_dir, int a_len=1)

void	adjCellHi (DisjointBoxLayout &a_output, const DisjointBoxLayout &a_input, int a_dir, int a_len=1)

Friends inherited from BoxLayout

Modification functions
void	coarsen (DisjointBoxLayout &output, const DisjointBoxLayout &input, int refinement)

void	refine (DisjointBoxLayout &output, const DisjointBoxLayout &input, int refinement)

virtual void	close ()

void	setDomain (const ProblemDomain &a_domain)

virtual void	deepCopy (const DisjointBoxLayout &a_source)

virtual void	deepCopy (const BoxLayout &a_source)

virtual void	deepCopy (const BoxLayout &a_source, const ProblemDomain &a_physDomain)

void	degenerate (DisjointBoxLayout &a_to, const SliceSpec &a_ss) const

Detailed Description

A BoxLayout that has a concept of disjointedness.

DisjointBoxLayout is-a BoxLayout that has a concept of disjointedness of the boxes. DisjointBoxLayout is only different from BoxLayout in that it has a method isDisjoint(). DisjointBoxLayouts also have a ProblemDomain member to ensure disjointness in the case of periodic boundary conditions, among other things.

Constructor & Destructor Documentation

◆ DisjointBoxLayout() [1/3]

DisjointBoxLayout::DisjointBoxLayout ( )

Construct BoxLayout with no boxes.

◆ DisjointBoxLayout() [2/3]

DisjointBoxLayout::DisjointBoxLayout	(	const Vector< Box > &	a_boxes,
		const Vector< int > &	a_procIDs
	)

Construct from a Vector of Boxes and optionally a Vector of processor assignments. If the processor assignment Vector is present, it must be either zero-length or the same length as the Box Vector. On exit, the DisjointBoxLayout will be closed.

◆ DisjointBoxLayout() [3/3]

DisjointBoxLayout::DisjointBoxLayout	(	const Vector< Box > &	a_boxes,
		const Vector< int > &	a_procIDs,
		const ProblemDomain &	a_physDomain
	)

Construct from a Vector of Boxes and optionally a Vector of processor assignments. If the processor assignment Vector is present, it must be either zero-length or the same length as the Box Vector. On exit, the DisjointBoxLayout will be closed.

◆ ~DisjointBoxLayout()

virtual DisjointBoxLayout::~DisjointBoxLayout ( )

inlinevirtual

Ref-counted destruction. Once the last reference to the implementation of this class is destroyed, the data members are cleaned up.

References define(), and defineAndLoadBalance().

Member Function Documentation

◆ define() [1/4]

virtual void DisjointBoxLayout::define	(	const Vector< Box > &	a_boxes,
		const Vector< int > &	a_procIDs
	)

virtual

Define this DisjointBoxLayout from a Vector of Boxes. This is a wrapper for a call to BoxLayout::define, required because DisjointBoxLayout::define is overloaded and the compiler will not look into the base class for name resolution.

Reimplemented from BoxLayout.

Referenced by define_pd(), and ~DisjointBoxLayout().

◆ defineAndLoadBalance() [1/2]

void DisjointBoxLayout::defineAndLoadBalance	(	const Vector< Box > &	a_boxes,
		Vector< int > *	a_procIDs
	)

Like the define() that takes the same two arguments, except this one also initializes a_procIDs if it's not NULL. In that case, the passed-in a_procIDs should point to a Vector of size 0.

Referenced by ~DisjointBoxLayout().

◆ defineAndLoadBalance() [2/2]

void DisjointBoxLayout::defineAndLoadBalance	(	const Vector< Box > &	a_boxes,
		Vector< int > *	a_procIDs,
		const ProblemDomain &	a_physDomain
	)

Like the define() that takes the same two arguments, except this one also initializes a_procIDs if it's not NULL. In that case, the passed-in a_procIDs should point to a Vector of size 0.

◆ define() [2/4]

void DisjointBoxLayout::define ( const BoxLayout & a_layout )

Shallow define. Only way to promote a BoxLayout. If BoxLayout has been closed, then this method checks isDisjoint and throws an error if not disjoint. If a_layout is disjoint, then this object becomes a closed DisjointBoxLayout object.

◆ define() [3/4]

void DisjointBoxLayout::define	(	const BoxLayout &	a_layout,
		const ProblemDomain &	a_physDomain
	)

Shallow define. Only way to promote a BoxLayout. If BoxLayout has been closed, then this method checks isDisjoint and throws an error if not disjoint. If a_layout is disjoint, then this object becomes a closed DisjointBoxLayout object. If BoxLayout has been closed, and is sorted, the neighbour iterator is rebuilt (now with knowledge of the problem domain).

◆ define() [4/4]

virtual void DisjointBoxLayout::define	(	const Vector< Box > &	a_boxes,
		const Vector< int > &	a_procIDs,
		const ProblemDomain &	a_physDomain
	)

virtual

Define this DisjointBoxLayout from a Vector of Boxes. This is a wrapper for a call to BoxLayout::define, required because DisjointBoxLayout::define is overloaded and the compiler will not look into the base class for name resolution.

◆ define_pd()

virtual void DisjointBoxLayout::define_pd	(	const Vector< Box > &	a_boxes,
		const Vector< int > &	a_procIDs,
		const ProblemDomain &	a_physDomain
	)

inlinevirtual

Define this DisjointBoxLayout from a Vector of Boxes. Same as define.

References checkDomains(), checkPeriodic(), close(), define(), and isDisjoint().

◆ isDisjoint()

bool DisjointBoxLayout::isDisjoint ( ) const

Returns true if this object contains a disjoint union of Boxes.

The Disjoint testing algorithm assumes that the boxes are CELL-Centered boxes. We can expand the algorithm when someone needs it. bvs

Referenced by define_pd().

◆ checkPeriodic()

bool DisjointBoxLayout::checkPeriodic ( const ProblemDomain & a_domain ) const

Checks to see that problem domains are compatible. To be compatible:

a_domain and the ProblemDomain in this DisjointBoxLayout must have the same periodicity.
The ProblemDomains must be periodic in the same dimensions.
In all periodic directions, the period must be the same.

There are no checks in non-periodic directions, since DisjointBoxLayouts don't care about physical domains except in the periodic case.

Referenced by define_pd().

◆ checkDomains()

bool DisjointBoxLayout::checkDomains ( const DisjointBoxLayout & a_dbl ) const

Performs problem domain check when we don't have direct access to a problemDomain.

Returns true if this and a_dbl have compatible ProblemDomains.

Referenced by define_pd().

◆ close()

virtual void DisjointBoxLayout::close ( )

virtual

Mark this DisjointBoxLayout as complete and unchangeable.

Reimplemented from BoxLayout.

Referenced by blockReadLevel(), define_pd(), and readLevel().

◆ setDomain()

void DisjointBoxLayout::setDomain ( const ProblemDomain & a_domain )

inline

Set ProblemDomain. Useful when using addBox() and trying to use closeNoSort()

References adjCellHi, adjCellLo, closeNoSort(), coarsen, deepCopy(), degenerate(), MayDay::Error(), BoxLayout::m_closed, m_physDomain, physDomain(), and refine.

◆ deepCopy() [1/3]

virtual void DisjointBoxLayout::deepCopy ( const DisjointBoxLayout & a_source )

virtual

Create new open DisjointBoxLayout with copied data.

Doesn't check for disjointness, since a_source is already guaranteed to be disjoint. Also copies problem domain info.

Referenced by setDomain().

◆ deepCopy() [2/3]

virtual void DisjointBoxLayout::deepCopy ( const BoxLayout & a_source )

virtual

Create new open DisjointBoxLayout with copied data.

Checks that the source BoxLayout isDisjoint, throws an error if it is not. Otherwise, same as BoxLayout::deepCopy.

Reimplemented from BoxLayout.

◆ deepCopy() [3/3]

virtual void DisjointBoxLayout::deepCopy	(	const BoxLayout &	a_source,
		const ProblemDomain &	a_physDomain
	)

virtual

Create new open DisjointBoxLayout with copied data.

Checks that the source BoxLayout isDisjoint, throws an error if it is not. Otherwise, same as BoxLayout::deepCopy.

◆ degenerate()

void DisjointBoxLayout::degenerate	(	DisjointBoxLayout &	a_to,
		const SliceSpec &	a_ss
	)		const

Makes a_to a one-cell-thick version of *this – sliced at a_ss.position along the a_ss.direction'th axis. If a_ss.position is outside the range of *this, that's a fatal error.

Referenced by LevelData< EBFluxFAB >::degenerate(), and setDomain().

◆ physDomain()

const ProblemDomain& DisjointBoxLayout::physDomain ( ) const

Referenced by BCFunction::fillGhostCells(), setDomain(), and MergeSolver< T >::solve().

◆ closeNoSort()

virtual void DisjointBoxLayout::closeNoSort ( )

virtual

Reimplemented from BoxLayout.

Referenced by setDomain().

◆ computeNeighbors()

void DisjointBoxLayout::computeNeighbors ( )

protected

◆ closeN()

virtual void DisjointBoxLayout::closeN ( RefCountedPtr< Vector< Vector< std::pair< int, LayoutIndex > > > > neighbors )

protectedvirtual

◆ closeNO()

virtual void DisjointBoxLayout::closeNO ( )

protectedvirtual

Friends And Related Function Documentation

◆ Copier

friend class Copier

friend

◆ NeighborIterator

friend class NeighborIterator

friend

◆ coarsen

void coarsen	(	DisjointBoxLayout &	output,
		const DisjointBoxLayout &	input,
		int	refinement
	)

friend

Coarsen a DisjointBoxLayout:

output must be open
input must be closed
refinement must be a positive non-zero integer
output and input do not share an implementation.

output is first deepCopy'ed from input, then coarsen(refinement) is called on each box of output.

output returns from this function closed.

LayoutIterators and DataIterators from input and output can be used interchangeably.

Referenced by coarsen_dbl(), and setDomain().

◆ refine

void refine	(	DisjointBoxLayout &	output,
		const DisjointBoxLayout &	input,
		int	refinement
	)

friend

Refine a DisjointBoxLayout:

output must be open
input must be closed
refinement must be a positive non-zero integer
output and input do not share an implementation.

output is first deepCopy'ed from input, then refine(refinement) is called on each box of output.

output returns from this function closed.

LayoutIterators and DataIterators from input and output can be used interchangeably.

Referenced by refine_dbl(), and setDomain().

◆ adjCellLo

void adjCellLo	(	DisjointBoxLayout &	a_output,
		const DisjointBoxLayout &	a_input,
		int	a_dir,
		int	a_len = `1`
	)

friend

Returns the set of boxes which you get from calling Box::adjCellLo on each box in input. Output must be open, is closed upon exit from this function. A negative length results in the set of boxes of width a_len on the low side of, but inside the original boxes.

Referenced by adjCellLo_dbl(), and setDomain().

◆ adjCellHi

void adjCellHi	(	DisjointBoxLayout &	a_output,
		const DisjointBoxLayout &	a_input,
		int	a_dir,
		int	a_len = `1`
	)

friend

Returns the set of boxes which result from calling Box::adjCellHi on each box in input. Output must be open, will be closed upon exiting this function. A negative length results in the set of boxes of width a_len on the low side of, but inside the original boxes.

Referenced by adjCellHi_dbl(), and setDomain().

Member Data Documentation

◆ m_physDomain

ProblemDomain DisjointBoxLayout::m_physDomain

protected

Referenced by setDomain().

◆ m_neighbors

RefCountedPtr<Vector<Vector<std::pair<int, LayoutIndex> > > > DisjointBoxLayout::m_neighbors

protected

The documentation for this class was generated from the following file:

DisjointBoxLayout.H

Public Member Functions

Protected Member Functions

Protected Attributes

Friends

Modification functions

Detailed Description

Constructor & Destructor Documentation

◆ DisjointBoxLayout() [1/3]

◆ DisjointBoxLayout() [2/3]

◆ DisjointBoxLayout() [3/3]

◆ ~DisjointBoxLayout()

Member Function Documentation

◆ define() [1/4]

◆ defineAndLoadBalance() [1/2]

◆ defineAndLoadBalance() [2/2]

◆ define() [2/4]

◆ define() [3/4]

◆ define() [4/4]

◆ define_pd()

◆ isDisjoint()

◆ checkPeriodic()

◆ checkDomains()

◆ close()

◆ setDomain()

◆ deepCopy() [1/3]

◆ deepCopy() [2/3]

◆ deepCopy() [3/3]

◆ degenerate()

◆ physDomain()

◆ closeNoSort()

◆ computeNeighbors()

◆ closeN()

◆ closeNO()

Friends And Related Function Documentation

◆ Copier

◆ NeighborIterator

◆ coarsen

◆ refine

◆ adjCellLo

◆ adjCellHi

Member Data Documentation

◆ m_physDomain

◆ m_neighbors