#include "REAL.H"#include "LevelData.H"#include "Vector.H"#include "FArrayBox.H"#include "IntVectSet.H"#include <string>#include "LDF.H"Include dependency graph for AMRIO.H:
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Go to the source code of this file.
Compounds | |
| class | AMRData |
Functions | |
| void | WriteAMRHierarchyHDF5 (string filename, const AMRData &data) |
| void | WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels) |
| void | WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels) |
| void | WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels) |
| void | WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels) |
| int | ReadAMRHierarchyHDF5 (string filename, AMRData &data) |
| int | ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels, const IntVect &a_ghostVector=IntVect::TheZeroVector()) |
| int | ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels, const IntVect &a_ghostVector=IntVect::TheZeroVector()) |
| int | ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels, const IntVect &a_ghostVector=IntVect::TheZeroVector()) |
| int | ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels, const IntVect &a_ghostVector=IntVect::TheZeroVector()) |
| int | ReadEBAMRASCII (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Vector< IntVectSet > &a_coveredCells, Vector< IntVectSet > &a_multiValuedCells, Vector< int > &a_refRatio, int &a_numLevels, const IntVect &a_ghostVector=IntVect::TheZeroVector()) |
| void | writeFAB (const FArrayBox *a_dataPtr) |
| void | viewFAB (const FArrayBox *a_dataPtr) |
| void | writeFABname (const FArrayBox *a_dataPtr, const char *a_filename) |
| void | writeLDF (const LDF *a_dataPtr) |
| void | writeLevel (const LevelData< FArrayBox > *a_dataPtr) |
| void | viewLevel (const LevelData< FArrayBox > *a_dataPtr) |
| void | writeLDFname (const LDF *a_dataPtr, const string &a_filename) |
| void | writeLevelname (const LevelData< FArrayBox > *a_dataPtr, const char *a_filename) |
| void | WritePartialAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_baseDomain, const Real &a_baseDx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const Interval &a_levels) |
| void | writeAFabASCII (std::ostream &os, const FArrayBox &fab) |
| void | readAFabASCII (istream &is, FArrayBox &fab) |
| void | WriteAMRHierarchyASCII (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels) |
| int | ReadAMRHierarchyASCII (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< FArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_vectRatio, int &a_numLevels, const IntVect &ghostVector=IntVect::TheZeroVector()) |
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Reads hierarchy of levels in ASCII format. Returns 0 on success. {\bf Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ a_ghostVector : number of ghost cells on output .\ {\bf Returns:}\ status code with values:\ 0: success\ -1: failure\ |
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Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. {\bf Arguments:}\ handle : handle to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\ {\bf Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is not blocking. |
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Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. {\bf Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\ {\bf Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is blocking. |
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Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. {\bf Arguments:}\ handle : handle to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\ {\bf Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is not blocking |
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Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. {\bf Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\ {\bf Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is blocking |
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Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. {\bf Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\ {\bf Returns:} \ status code with values:\ 0: success \ -1: bogus number of levels \ -2: bogus number of components \ -3: error in readlevel \ -4: file open failed \ This is blocking |
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Reads hierarchy of EB levels in ASCII format. Returns 0 on success. Data is read in as FArrayBoxes because the data file does not include sufficient information to reconstruct the EBIS. {\bf Arguments:}\ filename : file to input from.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_multiValuedCells : multi-valued cells at all levels \ (ith entry is refinement ratio between levels i and i + 1).\ a_coveredCells : covered cells at all levels \ (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to read.\ returns 0 if successful. |
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View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running ChomboVis with a python script which brings up a data browser by default. The file has the same format as WriteAMRHierarchyHDF5, but for a single FArrayBox. This is useful for debugging. |
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View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running ChomboVis with a python script which brings up a data browser by default. The file has the same format as WriteAMRHierarchyHDF5, but for a single LevelData<FArrayBox>. This is useful for debugging. |
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Writes hierarchy of levels in ASCII format. {\bf Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ |
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Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. {\bf Arguments:}\ handle : handle to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is not blocking. |
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Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. {\bf Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_domain : domain at coarsest level.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is blocking. |
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Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. {\bf Arguments:}\ handle : handle to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is not blocking. |
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Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. {\bf Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is blocking. |
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Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. {\bf Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at coarsest level.\ a_dx : grid spacing at coarsest level.\ a_dt : time step at coarsest level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is blocking. |
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Writes a plotfile using the same format as WriteAMRHierarchyHDF5, but for a FArrayBox. This is useful for debugging. *a_dataPtr is written to a file named fab.hdf5 |
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Writes a plotfile using the same format as WriteAMRHierarchyHDF5, but for a FArrayBox. This is useful for debugging. *a_dataPtr is written to the file given by a_filename. |
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Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<FArrayBox>. Useful for debugging. *a_dataPtr is written to a file named LDF.hdf5. |
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Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<FArrayBox>. Useful for debugging. *a_dataPtr is written to the file given by a_filename. |
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Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<FArrayBox>. Useful for debugging. *a_dataPtr is written to a file named LDF.hdf5. |
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Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<FArrayBox>. Useful for debugging. *a_dataPtr is written to the file given by a_filename. |
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Write a plotfile with levels that don't necessarily begin with 0 (will translate things so that lBase comes out as level 0, etc) Levels in Vector arguments should correspond with actual levels. (and so should be defined for a_levels.begin() through a_levels.end(). {\bf Arguments:}\ filename : file to output to.\ a_vectGrids : grids at each level.\ a_vectData : data at each level.\ a_vectNames: names of variables.\ a_domain : domain at base level (given by a_levels.begin()).\ a_dx : grid spacing at base level.\ a_dt : time step at base level.\ a_time : time.\ a_vectRatio : refinement ratio at all levels (ith entry is refinement ratio between levels i and i + 1).\ a_numLevels : number of levels to output.\ This is blocking. |
1.2.16