NodeAMRIO.H File Reference

#include "REAL.H"
#include "LevelData.H"
#include "Vector.H"
#include "NodeFArrayBox.H"
#include <string>
#include "IntVect.H"

Include dependency graph for NodeAMRIO.H:

Go to the source code of this file.

Functions
void	WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels, const RealVect &a_origin=RealVect::Zero, const Interval &a_comps=Interval())
void	WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< Vector< LevelData< NodeFArrayBox > * > > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels)
void	WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_domain, const Real &a_dx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const int &a_numLevels, const RealVect &a_origin=RealVect::Zero, const Interval &a_comps=Interval())
void	WriteAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels)
void	WriteAMRHierarchyHDF5 (HDF5Handle &handle, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &a_vectData, const Box &a_domain, const Vector< int > &a_vectRatio, const int &a_numLevels)
int	ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false)
int	ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Vector< string > &a_vectNames, Box &a_domain, Real &a_dx, Real &a_dt, Real &a_time, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false)
int	ReadAMRHierarchyHDF5 (const string &filename, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false)
int	ReadAMRHierarchyHDF5 (HDF5Handle &handle, Vector< DisjointBoxLayout > &a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &a_vectData, Box &a_domain, Vector< int > &a_refRatio, int &a_numLevels, bool a_setGhost=false)
void	writeNFAB (const NodeFArrayBox *a_dataPtr)
void	viewNFAB (const NodeFArrayBox *a_dataPtr)
void	writeNFABname (const NodeFArrayBox *a_dataPtr, const char *a_filename)
void	writeNodeLevel (const LevelData< NodeFArrayBox > *a_dataPtr)
void	viewNodeLevel (const LevelData< NodeFArrayBox > *a_dataPtr)
void	writeNodeLevelname (const LevelData< NodeFArrayBox > *a_dataPtr, const char *a_filename)
void	WritePartialAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< LevelData< FArrayBox > * > &a_vectData, const Vector< string > &a_vectNames, const Box &a_baseDomain, const Real &a_baseDx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const Interval &a_levels)
void	WritePartialAMRHierarchyHDF5 (const string &filename, const Vector< DisjointBoxLayout > &a_vectGrids, const Vector< Vector< LevelData< NodeFArrayBox > * > > &a_vectData, const Vector< string > &a_vectNames, const Box &a_baseDomain, const Real &a_baseDx, const Real &a_dt, const Real &a_time, const Vector< int > &a_vectRatio, const Interval &a_levels)

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Function Documentation

int ReadAMRHierarchyHDF5 (  HDF5Handle &  handle, Vector< DisjointBoxLayout > &  a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &  a_vectData, Box &  a_domain, Vector< int > &  a_refRatio, int &  a_numLevels, bool  a_setGhost = false )

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. Returns status code with values: 0: success -1: bogus number of levels -2: bogus number of components -3: error in readlevel -4: file open failed This is not blocking. Parameters: handle  handle to input from a_vectGrids  grids at each level a_vectData  data indexed by level a_domain  domain at coarsest level a_refRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to read in

int ReadAMRHierarchyHDF5 (  const string &  filename, Vector< DisjointBoxLayout > &  a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &  a_vectData, Box &  a_domain, Vector< int > &  a_refRatio, int &  a_numLevels, bool  a_setGhost = false )

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. Returns status code with values: 0: success -1: bogus number of levels -2: bogus number of components -3: error in readlevel -4: file open failed This is blocking. Parameters: filename  file to read input from a_vectGrids  grids at each level a_vectData  data indexed by level a_domain  domain at coarsest level a_refRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to read in

int ReadAMRHierarchyHDF5 (  HDF5Handle &  handle, Vector< DisjointBoxLayout > &  a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &  a_vectData, Vector< string > &  a_vectNames, Box &  a_domain, Real &  a_dx, Real &  a_dt, Real &  a_time, Vector< int > &  a_refRatio, int &  a_numLevels, bool  a_setGhost = false )

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. Returns status code with values: 0: success -1: bogus number of levels -2: bogus number of components -3: error in readlevel -4: file open failed This is not blocking. Parameters: handle  handle to read input from a_vectGrids  grids at each level a_vectData  data indexed by level a_vectNames  names of variables in a_vectData a_domain  domain at coarsest level a_dx  grid spacing at coarsest level a_dt  time step at coarsest level a_time  time a_refRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to read in

int ReadAMRHierarchyHDF5 (  const string &  filename, Vector< DisjointBoxLayout > &  a_vectGrids, Vector< LevelData< NodeFArrayBox > * > &  a_vectData, Vector< string > &  a_vectNames, Box &  a_domain, Real &  a_dx, Real &  a_dt, Real &  a_time, Vector< int > &  a_refRatio, int &  a_numLevels, bool  a_setGhost = false )

Reads hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. Returns 0 on success. Returns status code with values: 0: success -1: bogus number of levels -2: bogus number of components -3: error in readlevel -4: file open failed This is blocking. Parameters: filename  file to read input from a_vectGrids  grids at each level a_vectData  data indexed by level a_vectNames  names of variables in a_vectData a_domain  domain at coarsest level a_dx  grid spacing at coarsest level a_dt  time step at coarsest level a_time  time a_refRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to read in

void viewNFAB (  const NodeFArrayBox *  a_dataPtr  )

View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running ChomboVis with a python script which brings up a data browser by default. The file has the same format as WriteAMRHierarchyHDF5, but for a single NodeFArrayBox. This is useful for debugging.

void viewNodeLevel (  const LevelData< NodeFArrayBox > *  a_dataPtr  )

View *a_dataPtr by writing it to an HDF5 plotfile (to a temporary file) and then running ChomboVis with a python script which brings up a data browser by default. The file has the same format as WriteAMRHierarchyHDF5, but for a single LevelData<NodeFArrayBox>. This is useful for debugging.

void WriteAMRHierarchyHDF5 (  HDF5Handle &  handle, const Vector< DisjointBoxLayout > &  a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &  a_vectData, const Box &  a_domain, const Vector< int > &  a_vectRatio, const int &  a_numLevels )

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. This is not blocking. Parameters: handle  handle to send output to a_vectGrids  grids at each level a_vectData  data indexed by level a_domain  domain at coarsest level a_vectRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to write out

void WriteAMRHierarchyHDF5 (  const string &  filename, const Vector< DisjointBoxLayout > &  a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &  a_vectData, const Box &  a_domain, const Vector< int > &  a_vectRatio, const int &  a_numLevels )

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. This is blocking. Parameters: filename  file to send output to a_vectGrids  grids at each level a_vectData  data indexed by level a_domain  domain at coarsest level a_vectRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to write out

void WriteAMRHierarchyHDF5 (  HDF5Handle &  handle, const Vector< DisjointBoxLayout > &  a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &  a_vectData, const Vector< string > &  a_vectNames, const Box &  a_domain, const Real &  a_dx, const Real &  a_dt, const Real &  a_time, const Vector< int > &  a_vectRatio, const int &  a_numLevels, const RealVect &  a_origin = RealVect::Zero, const Interval &  a_comps = Interval() )

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. This is not blocking. Parameters: handle  handle to send output to a_vectGrids  grids at each level a_vectData  data indexed by level a_vectNames  names of variables in a_vectData a_domain  domain at coarsest level a_dx  grid spacing at coarsest level a_dt  time step at coarsest level a_time  time a_vectRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to write out a_origin  physical coordinates of lower corner of cell at IntVect 0 a_comps  Interval of components to be written

void WriteAMRHierarchyHDF5 (  const string &  filename, const Vector< DisjointBoxLayout > &  a_vectGrids, const Vector< Vector< LevelData< NodeFArrayBox > * > > &  a_vectData, const Vector< string > &  a_vectNames, const Box &  a_domain, const Real &  a_dx, const Real &  a_dt, const Real &  a_time, const Vector< int > &  a_vectRatio, const int &  a_numLevels )

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. This function differs from the previous one in that a_vectData[ind][lev] indexes a LevelData<NodeFArrayBox>* (which may have several components) at level lev. This is blocking. Parameters: filename  file to send output to a_vectGrids  grids at each level a_vectData  data indexed by set and then by level a_vectNames  names of variables in a_vectData: first the names of the components of a_vectData[0], then the names of the components of a_vectData[1], etc. a_domain  domain at coarsest level a_dx  grid spacing at coarsest level a_dt  time step at coarsest level a_time  time a_vectRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to write out

void WriteAMRHierarchyHDF5 (  const string &  filename, const Vector< DisjointBoxLayout > &  a_vectGrids, const Vector< LevelData< NodeFArrayBox > * > &  a_vectData, const Vector< string > &  a_vectNames, const Box &  a_domain, const Real &  a_dx, const Real &  a_dt, const Real &  a_time, const Vector< int > &  a_vectRatio, const int &  a_numLevels, const RealVect &  a_origin = RealVect::Zero, const Interval &  a_comps = Interval() )

Writes hierarchy of levels in HDF5 format. Only available if the preprocessor macro HDF5 is defined at compilation. This is blocking. Parameters: filename  file to send output to a_vectGrids  grids at each level a_vectData  data indexed by level a_vectNames  names of variables in a_vectData a_domain  domain at coarsest level a_dx  grid spacing at coarsest level a_dt  time step at coarsest level a_time  time a_vectRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_numLevels  number of levels to write out a_origin  physical coordinates of lower corner of cell at IntVect 0 a_comps  Interval of components to be written

void writeNFAB (  const NodeFArrayBox *  a_dataPtr  )

Writes a plotfile using the same format as WriteAMRHierarchyHDF5, but for a NodeFArrayBox. This is useful for debugging. a_dataPtr is written to a file named nfab.hdf5

void writeNFABname (  const NodeFArrayBox *  a_dataPtr, const char *  a_filename )

Writes a plotfile using the same format as WriteAMRHierarchyHDF5, but for a NodeFArrayBox. This is useful for debugging. a_dataPtr is written to the file given by a_filename.

void writeNodeLevel (  const LevelData< NodeFArrayBox > *  a_dataPtr  )

Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<NodeFArrayBox>. Useful for debugging. a_dataPtr is written to a file named LDF.hdf5.

void writeNodeLevelname (  const LevelData< NodeFArrayBox > *  a_dataPtr, const char *  a_filename )

Write a plotfile using the same format as WriteAMRHierarchyHDF5, but for a single LevelData<FArrayBox>. Useful for debugging. a_dataPtr is written to the file given by a_filename.

void WritePartialAMRHierarchyHDF5 (  const string &  filename, const Vector< DisjointBoxLayout > &  a_vectGrids, const Vector< Vector< LevelData< NodeFArrayBox > * > > &  a_vectData, const Vector< string > &  a_vectNames, const Box &  a_baseDomain, const Real &  a_baseDx, const Real &  a_dt, const Real &  a_time, const Vector< int > &  a_vectRatio, const Interval &  a_levels )

Write a plotfile with levels that don't necessarily begin with 0 (will translate things so that base level comes out as level 0, etc.). Levels in Vector arguments should correspond with actual levels, and so should be defined for a_levels.begin() through a_levels.end(). This function differs from the previous one in that a_vectData[ind][lev] indexes a LevelData<NodeFArrayBox>* (which may have several components) at level lev. This is blocking. Parameters: filename  file to send output to a_vectGrids  grids at each level a_vectData  data indexed by set and then by level a_vectNames  names of variables in a_vectData a_baseDomain  domain at base level given by a_levels.begin() a_baseDx  grid spacing at base level a_dt  time step at base level a_time  time a_vectRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_levels  indices of levels to write out

void WritePartialAMRHierarchyHDF5 (  const string &  filename, const Vector< DisjointBoxLayout > &  a_vectGrids, const Vector< LevelData< FArrayBox > * > &  a_vectData, const Vector< string > &  a_vectNames, const Box &  a_baseDomain, const Real &  a_baseDx, const Real &  a_dt, const Real &  a_time, const Vector< int > &  a_vectRatio, const Interval &  a_levels )

Write a plotfile with levels that don't necessarily begin with 0 (will translate things so that base level comes out as level 0, etc.). Levels in Vector arguments should correspond with actual levels, and so should be defined for a_levels.begin() through a_levels.end(). This is blocking. Parameters: filename  file to send output to a_vectGrids  grids at each level a_vectData  data indexed by level a_vectNames  names of variables in a_vectData a_baseDomain  domain at base level given by a_levels.begin() a_baseDx  grid spacing at base level a_dt  time step at base level a_time  time a_vectRatio  refinement ratios between adjacent levels, starting with a_refRatio[0], the refinement ratio between levels 0 and 1; Vector length at least a_numLevels-1 a_levels  indices of levels to write out

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